Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X GEOMAR - Helmholtz Centre for Ocean Research Kiel GEOMAR http://www.geomar.de https://ror.org/02h2x0161 University of Vermont https://ror.org/0155zta11 deMayo James A University of Connecticut https://ror.org/02der9h97 Finiguerra Michael B 0000-0003-4216-0785 University of Connecticut https://ror.org/02der9h97 Baumann Hannes hannes.baumann@stonybrook.edu http://www.somas.stonybrook.edu/people/baumann.html 0000-0002-4039-4230 University of Connecticut https://ror.org/02der9h97 Dam Hans G hans.dam@uconn.edu 0000-0001-6121-5038 University of Connecticut https://ror.org/02der9h97 Pespeni Melissa H mpespeni@uvm.edu 0000-0001-5447-6678 University of Vermont https://ror.org/0155zta11 2025 Seawater carbonate chemistry and Acartia tonsa experimental evolution epigenetics dataset https://doi.org/10.1594/PANGAEA.984692 2025-09-02T07:06:03 We experimentally evolved the foundational marine copepod Acartia tonsa for 25 generations under ocean acidification, warming, and their combination and then measured epigenomic, genomic, and transcriptomic responses. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-09-02. Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X deMayo James A Finiguerra Michael B 0000-0003-4216-0785 Baumann Hannes hannes.baumann@stonybrook.edu http://www.somas.stonybrook.edu/people/baumann.html 0000-0002-4039-4230 Dam Hans G hans.dam@uconn.edu 0000-0001-6121-5038 Pespeni Melissa H mpespeni@uvm.edu 0000-0001-5447-6678 2025 Complementary genetic and epigenetic changes facilitate rapid adaptation to multiple global change stressors journal article Proceedings of the National Academy of Sciences of the United States of America 122(29) https://doi.org/10.1073/pnas.2422782122 e2422782122 Dam Hans G hans.dam@uconn.edu 0000-0001-6121-5038 deMayo James A Park Gihong 0000-0002-7775-6063 Norton Lydia He Xuejia Finiguerra Michael B 0000-0003-4216-0785 Baumann Hannes hannes.baumann@stonybrook.edu http://www.somas.stonybrook.edu/people/baumann.html 0000-0002-4039-4230 Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Pespeni Melissa H mpespeni@uvm.edu 0000-0001-5447-6678 2021 Seawater carbonate chemistry and egg production and hatching success of copepod Acartia tonsa dataset https://doi.org/10.1594/PANGAEA.943059 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X 2025 rsbrennan/tonsa_epigenetics: v2.0.0 software Zenodo https://doi.org/10.5281/ZENODO.15708666 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html 2019 Acartia tonsa Raw sequence reads: experimental evolution epigenetics dataset National Center for Biotechnology Information https://www.ncbi.nlm.nih.gov/bioproject?term=PRJNA590963 Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X 2024 Acartia tonsa experimental evolution epigenetics dataset Zenodo https://doi.org/10.5281/ZENODO.13994365 -72.001643 -72.001643 41.320725 41.320725 -72.001643 41.320725 2016-06-01T00:00:00 2016-06-30T00:00:00 OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 Esker_Point_Beach 41.320725 -72.001643 2016-06-01T00:00:00 2016-06-30T00:00:00 68 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Study type Species, unique identification Species UID species Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Species UID Species, unique identification (URI) Species UID (URI) species Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Species UID (URI) Species, unique identification (Semantic URI) Species UID (Semantic URI) species Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Species UID (Semantic URI) Treatment Treat treatment Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Treat Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Sal Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X AT [µmol/kg] Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X Temp [°C] pH, NBS scale pH NBS Brennan Reid S rbrennan@geomar.de 0000-0001-7678-564X pH NBS Carbonate system computation flag CSC flag Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag pH, total scale pHT Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pHT Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 DIC [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Calculated using seacarb after Nisumaa et al. (2010) https://doi.org/10.5194/essd-2-167-2010 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Acartia tonsa Animalia Arthropoda Bottles or small containers/Aquaria (<20 L) Coast and continental shelf Gene expression (incl. proteomics) Laboratory experiment North Atlantic Ocean acidification Other studied parameter or process Pelagos Single species Temperate Temperature Zooplankton author10403 author10414 author107699 author107700 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author30064 author32865 author34379 author39204 author48750 author51658 author55697 author55788 author56746 author59171 author59172 author59173 author69140 author74131 author74135 author88042 author88052 author88053 author88054 author88257 curlevel30 event2995492 geocode1599 geocode1600 geocode1601 inst20147 inst20253 inst21185 inst22303 journal13288 journal16590 license21 method6426 param185520 param49312 param49313 param510679 param534368 param534369 param54293 param54294 param716 param717 param80114 param82111 param82364 param82365 param82366 param87073 param96278 pi48750 pi74131 project4173 ref124625 ref128879 ref134962 ref134963 ref134964 ref134965 ref31273 ref79258 refds943059 term1073490 term1073493 term2606205 term2698012 term37599 term37647 term38253 term38477 term38841 term38844 term38851 term38855 term38858 term38860 term38874 term38876 term38895 term39424 term40646 term41013 term42455 term43298 term43821 term43834 term43972 term43996 term44030 term48166 term49384 term49506 term73928