PANGAEA_984692
Seawater carbonate chemistry and Acartia tonsa experimental evolution epigenetics
Brennan, Reid S; deMayo, James A; Finiguerra, Michael B; Baumann, Hannes; Dam, Hans G; Pespeni, Melissa H
Seawater carbonate chemistry and Acartia tonsa experimental evolution epigenetics
2025-09-02
PANGAEA
Dataset
https://doi.pangaea.de/10.1594/PANGAEA.984692
Investigator
Reid S
Brennan
rbrennan@geomar.de
Investigator
Yan
Yang
yangyan@xmu.edu.cn
Earth Science
Type of study
Species, unique identification
Species, unique identification (URI)
Species, unique identification (Semantic URI)
Treatment
Salinity
Alkalinity, total
Temperature, water
pH, NBS scale
Carbonate system computation flag
pH, total scale
Carbon dioxide
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Bicarbonate ion
Carbonate ion
Carbon, inorganic, dissolved
Aragonite saturation state
Calcite saturation state
geoscientificInformation
Acartia tonsa
Animalia
Arthropoda
Bottles or small containers/Aquaria (<20 L)
Coast and continental shelf
Esker_Point_Beach
Gene expression (incl. proteomics)
Laboratory experiment
North Atlantic
Ocean acidification
Other studied parameter or process
Pelagos
Single species
Temperate
Temperature
Zooplankton
Calculated using seacarb after Nisumaa et al. (2010)
2016-06-01
2016-06-30
Complete
41.320725
41.320725
-72.001643
-72.001643
OA-ICC
Ocean Acidification International Coordination Centre
unrestricted
CC-BY-4.0: Creative Commons Attribution 4.0 International
English
PANGAEA
Data Publisher for Earth & Environmental Science
https://www.pangaea.de/
Data Center Contact
Michael
Diepenbroek
info@pangaea.de
Leobener Str.
Bremen
Bremen
28359
Germany
online
68 data points
text/tab-separated-values
Brennan, Reid S; deMayo, James A; Finiguerra, Michael B; Baumann, Hannes; Dam, Hans G; Pespeni, Melissa H (2025): Complementary genetic and epigenetic changes facilitate rapid adaptation to multiple global change stressors. Proceedings of the National Academy of Sciences of the United States of America, 122(29), e2422782122, https://doi.org/10.1073/pnas.2422782122
Dam, Hans G; deMayo, James A; Park, Gihong; Norton, Lydia; He, Xuejia; Finiguerra, Michael B; Baumann, Hannes; Brennan, Reid S; Pespeni, Melissa H (2021): Seawater carbonate chemistry and egg production and hatching success of copepod Acartia tonsa [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.943059
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Brennan, Reid S (2025): rsbrennan/tonsa_epigenetics: v2.0.0 [software]. Zenodo, https://doi.org/10.5281/ZENODO.15708666
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Acartia tonsa Raw sequence reads: experimental evolution epigenetics (2019). National Center for Biotechnology Information, https://www.ncbi.nlm.nih.gov/bioproject?term=PRJNA590963
Brennan, Reid S (2024): Acartia tonsa experimental evolution epigenetics [dataset]. Zenodo, https://doi.org/10.5281/ZENODO.13994365
We experimentally evolved the foundational marine copepod Acartia tonsa for 25 generations under ocean acidification, warming, and their combination and then measured epigenomic, genomic, and transcriptomic responses.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-09-02. ** For all details see the full metadata description at "https://doi.pangaea.de/10.1594/PANGAEA.984692"!
http://mel.xmu.edu.cn/en/
https://cran.r-project.org/web/packages/seacarb/index.html
seacarb: seawater carbonate chemistry with R. R package version 3.3.3
https://doi.org/10.1073/pnas.2422782122
Complementary genetic and epigenetic changes facilitate rapid adaptation to multiple global change stressors
https://doi.org/10.5194/essd-16-3771-2024
An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal
https://doi.org/10.5194/essd-2-167-2010
Calculated using seacarb after Nisumaa et al. (2010)
https://doi.org/10.5194/essd-2-167-2010
EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification
https://doi.org/10.5194/essd-8-79-2016
Data compilation on the biological response to ocean acidification: an update
https://doi.org/10.5281/ZENODO.13994365
Acartia tonsa experimental evolution epigenetics
https://doi.org/10.5281/ZENODO.15708666
rsbrennan/tonsa_epigenetics: v2.0.0
https://doi.pangaea.de/10.1594/PANGAEA.943059
Seawater carbonate chemistry and egg production and hatching success of copepod Acartia tonsa
https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management
OA-ICC
https://www.ncbi.nlm.nih.gov/bioproject?term=PRJNA590963
Acartia tonsa Raw sequence reads: experimental evolution epigenetics
DIF
9.4
2025-09-02
2026-09-15