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Schoepf, Verena; Grottoli, Andréa G; McLachlan, Rowan H; Price, James T; Jury, Christopher P; Toonen, Robert J; De Carlo, Eric Heinen; McCulloch, Malcolm T (2025): Seawater carbonate chemistry and calcification mechanisms of three Hawaiian coral species (Montipora capitata, Porites compressa, Porites lobata) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.984357

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Published: 2025-08-18DOI registered: 2025-09-18

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Abstract:
Here, we used boron-based geochemical proxies (δ11B, B/Ca) to investigate how three common Hawaiian coral species (Montipora capitata, Porites compressa, Porites lobata) regulate the carbonate chemistry of the calcifying fluid along a natural environmental mosaic of seawater carbonate chemistry and significant wave height.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-08-18.
Keyword(s):
Acid-base regulation; Animalia; Benthic animals; Benthos; Cnidaria; Coast and continental shelf; Field observation; Montipora capitata; North Pacific; Porites compressa; Porites lobata; Single species; Tropical
Related to:
Schoepf, Verena; Grottoli, Andréa G; McLachlan, Rowan H; Price, James T; Jury, Christopher P; Toonen, Robert J; De Carlo, Eric Heinen; McCulloch, Malcolm T (2025): Coral calcification mechanisms across a natural environmental mosaic in Hawai'i. Limnology and Oceanography, lno.70118, https://doi.org/10.1002/lno.70118
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Median Latitude: 21.451320 * Median Longitude: -157.841538 * South-bound Latitude: 21.326290 * West-bound Longitude: -158.110340 * North-bound Latitude: 21.592520 * East-bound Longitude: -157.674600
Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00
Event(s):
Haleiwa  * Latitude: 21.592520 * Longitude: -158.110340 * Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00 * Method/Device: Experiment (EXP)
MokuoLoe_OA  * Latitude: 21.434170 * Longitude: -157.786340 * Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00 * Method/Device: Experiment (EXP)
Sampan_Channel  * Latitude: 21.452300 * Longitude: -157.794870 * Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00 * Method/Device: Experiment (EXP)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventSchoepf, Verena
Type of studyStudy typeSchoepf, Verena
IdentificationIDSchoepf, VerenaCoral
Species, unique identificationSpecies UIDSchoepf, Verena
Species, unique identification (URI)Species UID (URI)Schoepf, Verena
Species, unique identification (Semantic URI)Species UID (Semantic URI)Schoepf, Verena
SiteSiteSchoepf, Verena
δ11Bδ11B‰ SRMSchoepf, Verena
Calcifying fluid, pHCF pHSchoepf, Verena
10 pH, differenceDelta pHSchoepf, Verenabiological pH-upregulation= pHcf-pHsw
11 Boron/Calcium ratioB/Caµmol/molSchoepf, Verena
12 Calcifying fluid, carbonate ionCF [CO3]2-µmol/kgSchoepf, Verena
13 Calcifying fluid, dissolved inorganic carbonCF DICµmol/kgSchoepf, Verena
14 DifferenceDiffSchoepf, Verenabiological DIC-upregulation or how much higher internal [DIC] is than external seawater [DIC]
15 Temperature, waterTemp°CSchoepf, Verena
16 pH, total scalepHTSchoepf, Verena
17 Carbonate ion[CO3]2-µmol/kgSchoepf, Verena
18 Carbon, inorganic, dissolvedDICµmol/kgSchoepf, Verena
19 Wave height, significantH(sig)mSchoepf, Verena
20 SalinitySalSchoepf, Verena
21 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
22 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1430 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Study type

ID
(Coral)

Species UID

Species UID (URI)

Species UID (Semantic URI)

Site

δ11B [‰ SRM]

CF pH
10 
Delta pH
(biological pH-upregulation= p...)
11 
B/Ca [µmol/mol]
12 
CF [CO3]2- [µmol/kg]
13 
CF DIC [µmol/kg]
14 
Diff
(biological DIC-upregulation o...)
15 
Temp [°C]
16 
pHT
17 
[CO3]2- [µmol/kg]
18 
DIC [µmol/kg]
19 
H(sig) [m]
20 
Sal
21 
CSC flag
22 
CO2 [µmol/kg]
23 
fCO2water_SST_wet [µatm]
24 
pCO2water_SST_wet [µatm]
25 
[HCO3]- [µmol/kg]
26 
[CO3]2- [µmol/kg]
27 
AT [µmol/kg]
28 
Omega Arg
29 
Omega Cal
Haleiwa fieldMC-H-1Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Hale'iwa25.08.540.4661392332691.726.698.0822919561.134.399.76357.21358.331713.09233.152285.213.755.66
HaleiwafieldMC-H-2Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Hale'iwa26.58.640.5664499030131.526.698.0822919561.134.399.76357.21358.331713.09233.152285.213.755.66
HaleiwafieldMC-H-3Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Hale'iwa26.08.600.5263895930811.626.698.0822919561.134.399.76357.21358.331713.09233.152285.213.755.66
HaleiwafieldMC-H-4Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Hale'iwa26.18.610.5362299731481.626.698.0822919561.134.399.76357.21358.331713.09233.152285.213.755.66
HaleiwafieldMC-H-5Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Hale'iwa26.48.630.55631100130871.626.698.0822919561.134.399.76357.21358.331713.09233.152285.213.755.66
MokuoLoe_OA fieldMC-KB-1Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Moku o LoOA22.88.370.4352386338682.029.087.9417419350.234.0913.10507.11508.661736.50185.392193.283.024.54
MokuoLoe_OAfieldMC-KB-2Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Moku o LoOA23.38.400.4754787136721.929.087.9417419350.234.0913.10507.11508.661736.50185.392193.283.024.54
MokuoLoe_OAfieldMC-KB-3Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Moku o LoOA23.28.400.4652390238512.029.087.9417419350.234.0913.10507.11508.661736.50185.392193.283.024.54
MokuoLoe_OAfieldMC-KB-5Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Moku o LoOA22.98.380.4553985537481.929.087.9417419350.234.0913.10507.11508.661736.50185.392193.283.024.54
MokuoLoe_OAfieldMC-KB-12Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Moku o LoOA22.88.380.4454084537461.929.087.9417419350.234.0913.10507.11508.661736.50185.392193.283.024.54
Sampan_Channel fieldMC-S-1Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Sampan22.48.340.4851183939271.929.627.8615820210.433.6916.59648.70650.661839.42164.992243.052.714.06
Sampan_ChannelfieldMC-S-3Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Sampan23.68.420.5654788836061.829.627.8615820210.433.6916.59648.70650.661839.42164.992243.052.714.06
Sampan_ChannelfieldMC-S-6Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Sampan25.18.520.6560392331911.629.627.8615820210.433.6916.59648.70650.661839.42164.992243.052.714.06
Sampan_ChannelfieldMC-S-8Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Sampan23.48.410.5453988536751.829.627.8615820210.433.6916.59648.70650.661839.42164.992243.052.714.06
Sampan_ChannelfieldMC-S-9Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Sampan26.98.630.7666496227931.429.627.8615820210.433.6916.59648.70650.661839.42164.992243.052.714.06
Waimanalo fieldMC-W-1Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Waimanalo25.18.530.4361493232401.728.038.1024119090.934.698.74331.04332.061651.44248.822263.814.026.04
WaimanalofieldMC-W-2Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Waimanalo25.58.550.4661396732231.728.038.1024119090.934.698.74331.04332.061651.44248.822263.814.026.04
WaimanalofieldMC-W-3Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Waimanalo24.78.500.4060391733261.728.038.1024119090.934.698.74331.04332.061651.44248.822263.814.026.04
WaimanalofieldMC-W-4Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Waimanalo27.38.670.57659103328671.528.498.1024119090.834.698.65331.18332.191647.90252.452268.884.096.14
WaimanalofieldMC-W-5Montipora capitatamarinespecies.orgurn:lsid:marinespecies.org:taxname:287697Waimanalo24.18.460.3655694536261.928.498.1024119090.834.698.65331.18332.191647.90252.452268.884.096.14
HaleiwafieldPC-H-1Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Hale'iwa22.98.410.3351790040212.126.728.0822919561.134.399.75357.22358.341712.87233.382285.533.755.67
HaleiwafieldPC-H-3Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Hale'iwa25.28.550.48554104036061.826.728.0822919561.134.399.75357.22358.341712.87233.382285.533.755.67
HaleiwafieldPC-H-4Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Hale'iwa22.48.370.2946195945432.326.728.0822919561.134.399.75357.22358.341712.87233.382285.533.755.67
HaleiwafieldPC-H-6Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Hale'iwa23.28.430.35481100043002.226.728.0822919561.134.399.75357.22358.341712.87233.382285.533.755.67
HaleiwafieldPC-H-7Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Hale'iwa21.88.330.2545391046532.426.728.0822919561.134.399.75357.22358.341712.87233.382285.533.755.67
MokuoLoe_OAfieldPC-KB-1Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Moku o LoOA22.38.360.3943998847462.527.407.9617418750.234.3912.48464.80466.251684.10178.422127.342.884.34
MokuoLoe_OAfieldPC-KB-2Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Moku o LoOA23.88.450.49490103241572.227.407.9617418750.234.3912.48464.80466.251684.10178.422127.342.884.34
MokuoLoe_OAfieldPC-KB-3Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Moku o LoOA26.08.590.63509120338382.027.407.9617418750.234.3912.48464.80466.251684.10178.422127.342.884.34
MokuoLoe_OAfieldPC-KB-4Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Moku o LoOA24.38.480.52498106140572.227.407.9617418750.234.3912.48464.80466.251684.10178.422127.342.884.34
MokuoLoe_OAfieldPC-KB-5Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Moku o LoOA22.98.400.4447897243192.327.407.9617418750.234.3912.48464.80466.251684.10178.422127.342.884.34
Sampan_ChannelfieldPC-S-3Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Sampan22.98.410.4348991641102.127.377.9818719580.532.9912.60465.42466.871757.04188.372218.653.074.64
Sampan_ChannelfieldPC-S-4Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Sampan22.18.350.3744292346032.427.377.9818719580.532.9912.60465.42466.871757.04188.372218.653.074.64
Sampan_ChannelfieldPC-S-5Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Sampan24.18.480.5051297838452.027.377.9818719580.532.9912.60465.42466.871757.04188.372218.653.074.64
Sampan_ChannelfieldPC-S-9Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Sampan22.48.370.3948387741922.127.377.9818719580.532.9912.60465.42466.871757.04188.372218.653.074.64
Sampan_ChannelfieldPC-S-12Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Sampan23.28.420.4449991840102.027.377.9818719580.532.9912.60465.42466.871757.04188.372218.653.074.64
WaimanalofieldPC-W-1Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Waimanalo22.78.380.2849592641832.228.088.1024119090.834.698.73331.05332.081651.06249.212264.364.036.06
WaimanalofieldPC-W-2Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Waimanalo24.28.470.3754098237422.028.088.1024119090.834.698.73331.05332.081651.06249.212264.364.036.06
WaimanalofieldPC-W-3Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Waimanalo22.88.380.2850091841342.228.088.1024119090.834.698.73331.05332.081651.06249.212264.364.036.06
WaimanalofieldPC-W-4Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Waimanalo23.68.430.3350798540312.128.088.1024119090.834.698.73331.05332.081651.06249.212264.364.036.06
WaimanalofieldPC-W-5Porites compressamarinespecies.orgurn:lsid:marinespecies.org:taxname:207236Waimanalo24.28.470.37510103439692.128.088.1024119090.834.698.73331.05332.081651.06249.212264.364.036.06
HaleiwafieldPL-H-1Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Hale'iwa24.78.510.43466117743102.227.368.0822919560.834.399.61357.55358.661708.17238.222292.253.845.79
HaleiwafieldPL-H-2Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Hale'iwa25.88.580.51536112636591.927.368.0822919560.834.399.61357.55358.661708.17238.222292.253.845.79
HaleiwafieldPL-H-3Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Hale'iwa25.78.570.50557107135321.827.368.0822919560.834.399.61357.55358.661708.17238.222292.253.845.79
HaleiwafieldPL-H-4Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Hale'iwa25.38.550.47570101734731.827.368.0822919560.834.399.61357.55358.661708.17238.222292.253.845.79
HaleiwafieldPL-H-5Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Hale'iwa24.98.520.45505110639632.027.368.0822919560.834.399.61357.55358.661708.17238.222292.253.845.79
Sampan_ChannelfieldPL-S-8Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Sampan24.88.510.57452120343542.227.937.9417819730.533.7913.74516.58518.181778.40180.862222.552.944.43
Sampan_ChannelfieldPL-S-9Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Sampan24.98.530.58543101636121.827.937.9417819730.533.7913.74516.58518.181778.40180.862222.552.944.43
Sampan_ChannelfieldPL-S-10Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Sampan25.98.580.64559106634481.727.937.9417819730.533.7913.74516.58518.181778.40180.862222.552.944.43
Sampan_ChannelfieldPL-S-11Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Sampan24.98.520.58475116141372.127.937.9417819730.533.7913.74516.58518.181778.40180.862222.552.944.43
Sampan_ChannelfieldPL-S-12Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Sampan25.08.530.59510108538451.927.937.9417819730.533.7913.74516.58518.181778.40180.862222.552.944.43
WaimanalofieldPL-W-3Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Waimanalo23.68.440.34437114646832.527.888.1024119090.834.698.77330.99332.011652.59247.642262.174.006.01
WaimanalofieldPL-W-4Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Waimanalo23.18.410.31457104845112.427.888.1024119090.834.698.77330.99332.011652.59247.642262.174.006.01
WaimanalofieldPL-W-5Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Waimanalo23.48.420.32429114647792.527.888.1024119090.834.698.77330.99332.011652.59247.642262.174.006.01
WaimanalofieldPL-W-6Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Waimanalo23.78.440.35422120348392.527.888.1024119090.834.698.77330.99332.011652.59247.642262.174.006.01
WaimanalofieldPL-W-11Porites lobatamarinespecies.orgurn:lsid:marinespecies.org:taxname:207225Waimanalo25.18.530.43511112138982.028.028.1024119090.834.698.75331.04332.061651.52248.742263.704.026.04