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Oswalt, Hannah E; Schram, Julie B; Amsler, Margaret O; Amsler, Charles D; McClintock, James B (2025): Seawater carbonate chemistry and survival of different members in Antarctic macroalgal-associated amphipod assemblages [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.983494

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Published: 2025-07-02DOI registered: 2025-08-07

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Abstract:
To assess how long-term acidification may influence the survival of different members in Antarctic macroalgal-associated amphipod assemblages, mesograzers, particularly amphipods, associated with the brown alga Desmarestia menziesii were collected from the immediate vicinity of Palmer Station, Antarctica (S64°46′, W64°03′) in January 2020 and maintained under three different pH treatments simulating ambient conditions (approximately pH 8.1), near-future conditions for 2100 (pH 7.7), and distant future conditions (pH 7.3) for 52 days then enumerated.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from U.S. Antarctic Program Data Center (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-07-02.
Keyword(s):
Antarctic; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Community composition and diversity; Desmarestia menziesii; Entire community; Laboratory experiment; Polar; Rocky-shore community
Related to:
Oswalt, Hannah E; Schram, Julie B; Amsler, Margaret O; Amsler, Charles D; McClintock, James B (2025): Antarctic macroalgal-associated amphipod assemblages exhibit long-term resistance to ocean acidification. PeerJ, 13, e19368, https://doi.org/10.7717/peerj.19368
Source:
2020 daily seawater carbonate chemistry (2023). U.S. Antarctic Program (USAP) Data Center, https://doi.org/10.15784/601700
Amphipod counts from 2020 ocean acidification experiment (2023). U.S. Antarctic Program (USAP) Data Center, https://doi.org/10.15784/601702
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: -64.766600 * Longitude: -64.050000
Date/Time Start: 2020-01-01T00:00:00 * Date/Time End: 2020-01-31T00:00:00
Event(s):
Palmer_Station_OA_amphipod * Latitude: -64.766600 * Longitude: -64.050000 * Date/Time Start: 2020-01-01T00:00:00 * Date/Time End: 2020-01-31T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Type of studyStudy typeOswalt, Hannah E
Experiment durationExp durationdaysOswalt, Hannah E
TreatmentTreatOswalt, Hannah E
SpeciesSpeciesOswalt, Hannah E
IndividualsInd#Oswalt, Hannah E
Individuals, standard errorInd std e±Oswalt, Hannah E
Individuals, standard deviationInd std dev±Oswalt, Hannah E
pH, total scalepHTOswalt, Hannah E
pH, standard deviationpH std dev±Oswalt, Hannah ESpectrophotometrictotal scale
10 Alkalinity, totalATµmol/kgOswalt, Hannah EPotentiometric titration
11 Alkalinity, total, standard deviationAT std dev±Oswalt, Hannah EPotentiometric titration
12 Temperature, waterTemp°COswalt, Hannah E
13 Temperature, water, standard deviationTemp std dev±Oswalt, Hannah E
14 SalinitySalOswalt, Hannah E
15 Salinity, standard deviationSal std dev±Oswalt, Hannah E
16 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmOswalt, Hannah ECalculated using CO2calc
17 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Oswalt, Hannah ECalculated using CO2calc
18 Carbon, inorganic, dissolvedDICµmol/kgOswalt, Hannah ECalculated using CO2calc
19 Carbon, inorganic, dissolved, standard deviationDIC std dev±Oswalt, Hannah ECalculated using CO2calc
20 Aragonite saturation stateOmega ArgOswalt, Hannah ECalculated using CO2calc
21 Aragonite saturation state, standard deviationOmega Arg std dev±Oswalt, Hannah ECalculated using CO2calc
22 Calcite saturation stateOmega CalOswalt, Hannah ECalculated using CO2calc
23 Calcite saturation state, standard deviationOmega Cal std dev±Oswalt, Hannah ECalculated using CO2calc
24 ReplicatesRepl#Oswalt, Hannah Ecarbonate chemistry parameters
25 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
26 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
27 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
28 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
29 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
30 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
31 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
32 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
33 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1772 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Study type

Exp duration [days]

Treat

Species

Ind [#]

Ind std e [±]

Ind std dev [±]

pHT

pH std dev [±]
(total scale, Spectrophotometric)
10 
AT [µmol/kg]
(Potentiometric titration)
11 
AT std dev [±]
(Potentiometric titration)
12 
Temp [°C]
13 
Temp std dev [±]
14 
Sal
15 
Sal std dev [±]
16 
pCO2water_SST_wet [µatm]
(Calculated using CO2calc)
17 
pCO2 std dev [±]
(Calculated using CO2calc)
18 
DIC [µmol/kg]
(Calculated using CO2calc)
19 
DIC std dev [±]
(Calculated using CO2calc)
20 
Omega Arg
(Calculated using CO2calc)
21 
Omega Arg std dev [±]
(Calculated using CO2calc)
22 
Omega Cal
(Calculated using CO2calc)
23 
Omega Cal std dev [±]
(Calculated using CO2calc)
24 
Repl [#]
(carbonate chemistry parameters)
25 
CSC flag
(Calculated using seacarb afte...)
26 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
27 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
28 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
29 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
30 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
31 
DIC [µmol/kg]
(Calculated using seacarb afte...)
32 
Omega Arg
(Calculated using seacarb afte...)
33 
Omega Cal
(Calculated using seacarb afte...)
Laboratory52InitialMetaleptamphopus pectinatus310.8823.5566.61
Laboratory52InitialBovallia gigantea5.380.681.92
Laboratory52InitialProstebbingia gracilis5.250.802.25
Laboratory52InitialGondogeneia antarctica21.881.694.79
Laboratory52InitialOraderea spp.53.637.3520.78
Laboratory52InitialDjerboa furcipes23.752.517.09
Laboratory52InitialJassa sp.0.750.250.71
Laboratory52InitialParaphimedia integricauda0.380.180.52
Laboratory52InitialGnathiphimedia sp.0.130.130.35
Laboratory52InitialStenothoidae (family)3.001.213.42
Laboratory52InitialProthaumatelson nasutum0.750.621.75
Laboratory52InitialLysianasidae (family)0.130.130.35
Laboratory52InitialMicrograzer
Laboratory52InitialCopepods14.632.126.00
Laboratory52InitialOstracods5.130.742.10
Laboratory52InitialIsopods0.750.310.89
Laboratory52InitialUnidentifiable19.131.885.33
Laboratory52AmbientMetaleptamphopus pectinatus10.632.476.998.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientBovallia gigantea4.130.722.038.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientProstebbingia gracilis4.251.454.108.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientGondogeneia antarctica24.752.446.908.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientOraderea spp.9.631.183.348.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientDjerboa furcipes16.502.045.788.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientJassa sp.0.380.180.528.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientParaphimedia integricauda0.380.260.748.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientGnathiphimedia sp.0.000.000.008.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientStenothoidae (family)8.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientProthaumatelson nasutum8.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientLysianasidae (family)8.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientMicrograzer0.000.000.008.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientCopepods75.138.2823.428.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientOstracods10.633.7710.688.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientIsopods0.130.130.358.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52AmbientUnidentifiable1.250.772.198.070.072284782.450.3432.970.29367482145561.620.372.590.588821.41369.50371.082022.56104.402148.361.582.52
Laboratory52pH 7.7Metaleptamphopus pectinatus13.503.168.937.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Bovallia gigantea4.630.842.397.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Prostebbingia gracilis3.250.882.497.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Gondogeneia antarctica17.882.978.397.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Oraderea spp.8.001.604.547.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Djerboa furcipes16.382.356.657.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Jassa sp.0.250.160.467.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Paraphimedia integricauda0.250.160.467.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Gnathiphimedia sp.0.130.130.357.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Stenothoidae (family)7.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Prothaumatelson nasutum7.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Lysianasidae (family)7.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Micrograzer0.130.130.357.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Copepods68.5016.9547.937.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Ostracods9.382.797.897.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Isopods0.000.000.007.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.7Unidentifiable1.000.732.077.690.112261422.460.3432.960.299472212243410.730.211.170.338855.11951.19955.262142.9247.112245.140.711.14
Laboratory52pH 7.3Metaleptamphopus pectinatus6.882.797.887.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Bovallia gigantea4.000.631.777.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Prostebbingia gracilis2.380.531.517.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Gondogeneia antarctica17.632.547.197.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Oraderea spp.6.131.333.767.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Djerboa furcipes19.382.567.257.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Jassa sp.0.130.130.357.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Paraphimedia integricauda0.000.000.007.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Gnathiphimedia sp.0.130.130.357.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Stenothoidae (family)7.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Prothaumatelson nasutum7.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Lysianasidae (family)7.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Micrograzer0.630.381.067.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Copepods72.0013.5638.367.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Ostracods3.751.313.697.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Isopods0.000.000.007.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49
Laboratory52pH 7.3Unidentifiable0.750.411.167.320.082245642.460.3332.960.2922454092343720.320.070.500.1188130.692254.522264.172194.0420.332345.050.310.49