Citation:

PANGAEA.982237

Name: Seawater carbonate chemistry and gastropod shell dissolution and microstructure
Published: 2025-04-30
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Lunella coronata; Mollusca; North Pacific; Single species; Tropical

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Published: 2025-04-30 • DOI registered: 2025-05-29

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Abstract:

This study examines the shell growth, surface erosion, and microstructural changes of the marine gastropod Lunella coronata granulata after 85 days of exposure to varying pH (8.1–7.1).

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-04-30.

Keyword(s):

Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Lunella coronata; Mollusca; North Pacific; Single species; Tropical

Related to:

Li, Xing; Song, Haijun; Tian, Li; Chen, Xiangmin; Sun, Xin; Yan, Jia; Jia, Enhao; Feng, Yan; Chu, Daoliang (2025): The impact of ocean acidification on gastropod shell dissolution and microstructure. Anthropocene, 50, 100470, https://doi.org/10.1016/j.ancene.2025.100470

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Song, Haijun
2	Species, unique identification	Species UID		Song, Haijun
3	Species, unique identification (URI)	Species UID (URI)		Song, Haijun
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Song, Haijun
5	Treatment: pH	T:pH		Song, Haijun
6	Identification	ID		Song, Haijun		Box
7	Growth rate	µ	mm/week	Song, Haijun		Shell
8	Rank	Rank		Song, Haijun		Shell erosion
9	Score	Score		Song, Haijun		Shell erosion
10	Area	Area	%	Song, Haijun		Shell light-colored
11	Gray level	GL		Song, Haijun		Shell average
12	Area	Area	%	Song, Haijun		Shell dissolution
13	pH, NBS scale	pH NBS		Song, Haijun
14	pH, standard deviation	pH std dev	±	Song, Haijun		NBS scale
15	Alkalinity, total	AT	µmol/kg	Song, Haijun
16	Alkalinity, total, standard deviation	AT std dev	±	Song, Haijun
17	Temperature, water	Temp	°C	Song, Haijun
18	Temperature, water, standard deviation	Temp std dev	±	Song, Haijun
19	Salinity	Sal		Song, Haijun
20	Salinity, standard deviation	Sal std dev	±	Song, Haijun
21	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Song, Haijun
22	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Song, Haijun
23	Calcite saturation state	Omega Cal		Song, Haijun
24	Calcite saturation state, standard deviation	Omega Cal std dev	±	Song, Haijun
25	Aragonite saturation state	Omega Arg		Song, Haijun
26	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Song, Haijun
27	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
28	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
30	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
32	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
34	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
36	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

612 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 T:pH	6 ID (Box)	7 µ [mm/week] (Shell)	8 Rank (Shell erosion)	9 Score (Shell erosion)	10 Area [%] (Shell light-colored)	11 GL (Shell average)	12 Area [%] (Shell dissolution)	13 pH NBS	14 pH std dev [±] (NBS scale)	15 AT [µmol/kg]	16 AT std dev [±]	17 Temp [°C]	18 Temp std dev [±]	19 Sal	20 Sal std dev [±]	21 pCO2water_SST_wet [µatm]	22 pCO2 std dev [±]	23 Omega Cal	24 Omega Cal std dev [±]	25 Omega Arg	26 Omega Arg std dev [±]	27 CSC flag	28 pHT	29 CO2 [µmol/kg]	30 fCO2water_SST_wet [µatm]	31 pCO2water_SST_wet [µatm]	32 [HCO3]- [µmol/kg]	33 [CO3]2- [µmol/kg]	34 DIC [µmol/kg]	35 Omega Arg	36 Omega Cal
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.1	1	0.00218	25.11	5.00	59.13	85.65	66.37	7.04	0.10	2342.55	411.40	24.97	0.43	30.31	1.20	5538.39	1423.63	0.63	0.21	0.41	0.14	26	6.90	213.54	7334.47	7358.15	2300.48	17.57	2531.60	0.29	0.44
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.1	2	0.00408	25	5.00	58.29	89.13	70.33	7.04	0.10	2342.55	411.40	24.97	0.43	30.31	1.20	5538.39	1423.63	0.63	0.21	0.41	0.14	26	6.90	213.54	7334.47	7358.15	2300.48	17.57	2531.60	0.29	0.44
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.1	3	0.00168	25.75	4.75	61.80	90.10	72.64	7.04	0.10	2342.55	411.40	24.97	0.43	30.31	1.20	5538.39	1423.63	0.63	0.21	0.41	0.14	26	6.90	213.54	7334.47	7358.15	2300.48	17.57	2531.60	0.29	0.44
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.3	1	0.00485	13.88	2.13	41.71	58.21	31.47	7.26	0.06	2368.09	252.74	24.97	0.43	30.71	0.93	3075.08	504.82	1.04	0.27	0.68	0.17	26	7.12	127.87	4401.00	4415.16	2297.48	29.45	2454.80	0.48	0.73
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.3	2	0.00637	14.91	2.00	37.25	55.78	29.19	7.26	0.06	2368.09	252.74	24.97	0.43	30.71	0.93	3075.08	504.82	1.04	0.27	0.68	0.17	26	7.12	127.87	4401.00	4415.16	2297.48	29.45	2454.80	0.48	0.73
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.3	3	0.00352	17.18	2.18	41.86	56.15	29.83	7.26	0.06	2368.09	252.74	24.97	0.43	30.71	0.93	3075.08	504.82	1.04	0.27	0.68	0.17	26	7.12	127.87	4401.00	4415.16	2297.48	29.45	2454.80	0.48	0.73
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.5	1	0.00246	15	1.60	42.21	66.91	42.76	7.45	0.05	2311.86	235.12	25.12	0.41	30.35	0.76	1936.22	307.07	1.50	0.31	0.98	0.20	26	7.31	79.45	2739.84	2748.62	2206.94	43.61	2330.00	0.71	1.09
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.5	2	0.00450	14.36	1.82	43.14	64.01	38.56	7.45	0.05	2311.86	235.12	25.12	0.41	30.35	0.76	1936.22	307.07	1.50	0.31	0.98	0.20	26	7.31	79.45	2739.84	2748.62	2206.94	43.61	2330.00	0.71	1.09
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.5	3	0.00666	19	3.08	48.44	65.09	42.39	7.45	0.05	2311.86	235.12	25.12	0.41	30.35	0.76	1936.22	307.07	1.50	0.31	0.98	0.20	26	7.31	79.45	2739.84	2748.62	2206.94	43.61	2330.00	0.71	1.09
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.7	1	0.01117	15.11	2.00	42.72	62.89	38.07	7.67	0.06	2269.71	225.08	24.96	0.44	30.21	0.77	1100.05	185.49	2.34	0.50	1.53	0.32	26	7.53	45.83	1572.89	1577.93	2104.55	68.42	2218.80	1.11	1.71
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.7	2	0.00620	17.58	1.58	47.02	65.43	43.04	7.67	0.06	2269.71	225.08	24.96	0.44	30.21	0.77	1100.05	185.49	2.34	0.50	1.53	0.32	26	7.53	45.83	1572.89	1577.93	2104.55	68.42	2218.80	1.11	1.71
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.7	3	0.00801	17	1.56	43.93	64.98	38.99	7.67	0.06	2269.71	225.08	24.96	0.44	30.21	0.77	1100.05	185.49	2.34	0.50	1.53	0.32	26	7.53	45.83	1572.89	1577.93	2104.55	68.42	2218.80	1.11	1.71
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.9	1	0.00807	14.67	2.08	45.50	63.93	38.79	7.86	0.05	2305.71	255.73	24.97	0.40	30.55	0.79	667.37	117.96	3.55	0.68	2.32	0.44	26	7.72	28.76	988.96	992.12	2053.95	104.40	2187.10	1.70	2.60
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.9	2	0.00718	11.1	1.00	38.38	59.65	33.23	7.86	0.05	2305.71	255.73	24.97	0.40	30.55	0.79	667.37	117.96	3.55	0.68	2.32	0.44	26	7.72	28.76	988.96	992.12	2053.95	104.40	2187.10	1.70	2.60
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	7.9	3	0.00897	13.5	1.60	41.91	63.50	38.43	7.86	0.05	2305.71	255.73	24.97	0.40	30.55	0.79	667.37	117.96	3.55	0.68	2.32	0.44	26	7.72	28.76	988.96	992.12	2053.95	104.40	2187.10	1.70	2.60
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	8.1	1	0.01059	14.69	1.92	42.14	61.02	35.39	8.07	0.05	2301.41	242.34	24.96	0.40	30.41	0.83	383.00	83.07	5.21	0.99	3.40	0.64	26	7.93	16.61	570.71	572.54	1920.87	157.71	2095.20	2.57	3.94
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	8.1	2	0.00665	13.75	2.08	42.33	65.86	40.28	8.07	0.05	2301.41	242.34	24.96	0.40	30.41	0.83	383.00	83.07	5.21	0.99	3.40	0.64	26	7.93	16.61	570.71	572.54	1920.87	157.71	2095.20	2.57	3.94
laboratory	Lunella coronata	marinespecies.org	urn:lsid:marinespecies.org:taxname:216363	8.1	3	0.01305	12.08	1.25	39.60	63.54	35.66	8.07	0.05	2301.41	242.34	24.96	0.40	30.41	0.83	383.00	83.07	5.21	0.99	3.40	0.64	26	7.93	16.61	570.71	572.54	1920.87	157.71	2095.20	2.57	3.94