Citation:

PANGAEA.981229

Name: Seawater carbonate chemistry and oyster physiological performance
Published: 2025-04-18
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea gigas; Growth/Morphology; Immunology/Self-protection; Laboratory experiment; Mollusca; North Atlantic; Other; Other studied parameter or process; Reproduction; Respiration; Single species; Temperate; Temperature

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Published: 2025-04-18 • DOI registered: 2025-05-17

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Abstract:

This study investigated the physiological responses of juvenile Pacific oyster Crassostrea gigas exposed for 81 days to current and ocean acidification and warming conditions (+3 ◦C, − 0.3 pH units) under two tidal treatments (0 vs. 30 % emersion) and two food levels (ad libitum vs. limited). We measured growth, reproduction, food ingestion, respiration, and biochemical traits like energy reserves and membrane fatty acids. At the experiment's end, oysters were challenged with a viral disease to assess the physiological cost of acclimation and potential trade-offs.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from SEANOE (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-04-17.

Keyword(s):

Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea gigas; Growth/Morphology; Immunology/Self-protection; Laboratory experiment; Mollusca; North Atlantic; Other; Other studied parameter or process; Reproduction; Respiration; Single species; Temperate; Temperature

Related to:

Caillon, Coline; Fleury, Elodie; Di Poi, Carole; Gazeau, Frédéric; Pernet, Fabrice (2025): Food availability, but not tidal emersion, influences the combined effects of ocean acidification and warming on oyster physiological performance. Aquaculture, 604, 742459, https://doi.org/10.1016/j.aquaculture.2025.742459

Source:

Caillon, Coline; Fleury, Elodie; Caput, Edgar; Chauvel, Lucie; Corporeau, Charlotte; Diagne, Moussa; Di Poi, Carole; Dubreuil, C; Foucault, Elodie; Gromberg, Theo; Huber, Matthias; Koechlin, Hugo; Le Grand, Jacqueline; Le Roy, Valerian; Queau, Isabelle; Quere, Claudie; Quillien, Virgile; Pernet, Fabrice (2024): Physiological data from Pacific oysters exposed to different temperature and pH conditions, tidal treatments and food levels, followed by an OsHV-1 challenge [dataset]. SEANOE, https://doi.org/10.17882/102048

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 46.011300 * Longitude: -1.160900

Date/Time Start: 2021-05-17T00:00:00 * Date/Time End: 2021-08-30T00:00:00

Event(s):

Charente_Maritime * Latitude: 46.011300 * Longitude: -1.160900 * Date/Time Start: 2021-05-17T00:00:00 * Date/Time End: 2021-08-30T00:00:00 * Method/Device: Experiment (EXP)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Pernet, Fabrice
2	Species, unique identification	Species UID		Pernet, Fabrice
3	Species, unique identification (URI)	Species UID (URI)		Pernet, Fabrice
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Pernet, Fabrice
5	Figure	Fig		Pernet, Fabrice
6	Date	Date		Pernet, Fabrice
7	Time in days	Time d	days	Pernet, Fabrice		Exposure
8	Period	Period		Pernet, Fabrice
9	Identification	ID		Pernet, Fabrice		Tank
10	Block	Block		Pernet, Fabrice
11	Scenario	Scenario		Pernet, Fabrice
12	Treatment	Treat		Pernet, Fabrice		Tidal
13	Treatment: food	T:food		Pernet, Fabrice
14	Sample amount	N	#	Pernet, Fabrice
15	Shell length	Shell l	cm	Pernet, Fabrice
16	Mass	Mass	g	Pernet, Fabrice		Total_body
17	Mass	Mass	g	Pernet, Fabrice		Shell
18	Mass	Mass	g	Pernet, Fabrice		Dry_flesh
19	Growth rate	µ	mm/day	Pernet, Fabrice		length, day 0-81
20	Growth rate	µ	mg/day	Pernet, Fabrice		mass, day 0-81
21	Condition index	CI		Pernet, Fabrice
22	Number	n	#	Pernet, Fabrice		total
23	Ingestion rate	IR	mm*3/g/day	Pernet, Fabrice
24	Respiration rate, oxygen	Resp O2	mg/g/h	Pernet, Fabrice
25	Sex	Sex		Pernet, Fabrice
26	Stage	Stage		Pernet, Fabrice
27	Number	No		Pernet, Fabrice		pool
28	Triacylglycerols/sterols ratio	TAG/ST		Pernet, Fabrice
29	Carbohydrates, per fresh mass	CHO fm	mg/g	Pernet, Fabrice
30	Proteins per fresh mass	Prot	mg/g	Pernet, Fabrice
31	Lipids	Lipids		Pernet, Fabrice
32	Fatty acid, common name	FA common		Pernet, Fabrice
33	Fatty acids	Fatty acids	%	Pernet, Fabrice
34	Time in days	Time d	days	Pernet, Fabrice		post infection
35	Comment	Comment		Pernet, Fabrice		Event
36	Ostreid herpesvirus 1, copy number	OsHV1	#/mg	Pernet, Fabrice
37	Comment	Comment		Pernet, Fabrice		OsHV1 prevalence
38	Temperature, water	Temp	°C	Pernet, Fabrice
39	pH, total scale	pHT		Pernet, Fabrice	Potentiometric
40	Salinity	Sal		Pernet, Fabrice
41	Dissolved oxygen saturation	DO sat	%	Pernet, Fabrice
42	Alkalinity, total	AT	µmol/kg	Pernet, Fabrice	Potentiometric titration
43	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Pernet, Fabrice	Calculated using seacarb
44	Carbon, inorganic, dissolved	DIC	µmol/kg	Pernet, Fabrice	Calculated using seacarb
45	Aragonite saturation state	Omega Arg		Pernet, Fabrice	Calculated using seacarb
46	Calcite saturation state	Omega Cal		Pernet, Fabrice	Calculated using seacarb
47	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
49	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
51	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
53	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
55	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

175972 data points

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