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Liu, Botao; Huo, Da; Gaitan-Espitia, Juan Diego; Guo, Xueying; Yang, Hongsheng; Zhang, Libin (2025): Seawater carbonate chemistry and locomotor behavior of sea cucumber Apostichopus japonicus [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.981112 (DOI registration in progress)

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Published: 2025-04-14

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Abstract:
This study investigates the impact of combined stressors—ocean warming, acidification and hypoxia on the locomotion behavior of Apostichopus japonicus under future ocean scenarios. Cumulative movement distance, cumulative movement time, mean velocity, and maximum velocity of sea cucumbers were measured.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-04-11.
Keyword(s):
Animalia; Apostichopus japonicus; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Echinodermata; Laboratory experiment; North Pacific; Oxygen; Single species; Temperate; Temperature
Related to:
Liu, Botao; Huo, Da; Gaitán-Espitia, Juan Diego; Guo, Xueying; Yang, Hongsheng; Zhang, Libin (2025): Multiple-stressor effects of ocean warming, acidification and hypoxia on the locomotor behavior of sea cucumber Apostichopus japonicus. Aquaculture, 603, 742366, https://doi.org/10.1016/j.aquaculture.2025.742366
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeZhang, Libin
2Species, unique identificationSpecies UIDZhang, Libin
3Species, unique identification (Semantic URI)Species UID (Semantic URI)Zhang, Libin
4Species, unique identification (URI)Species UID (URI)Zhang, Libin
5TreatmentTreatZhang, Libin
6ReplicatesRepl#Zhang, Libin
7Move durationMove durationsZhang, LibinCumulative
8Move duration, standard deviationMove duration std dev±Zhang, LibinCumulative
9ProportionProp%Zhang, Libinmovement time
10Proportion, standard deviationProp std dev±Zhang, Libinmovement time
11Resting durationRest durationsZhang, LibinCumulative
12Resting duration, standard deviationRest duration std dev±Zhang, LibinCumulative
13ProportionProp%Zhang, Libinrest time
14Proportion, standard deviationProp std dev±Zhang, Libinrest time
15Cumulative movement distanceCum move distcmZhang, Libin
16Cumulative movement distance, standard deviationCum move dist std dev±Zhang, Libin
17VelocityVcm/sZhang, Libinmean
18Velocity, standard deviationVel std dev±Zhang, Libinmean
19VelocityVcm/sZhang, Libinmax
20Velocity, standard deviationVel std dev±Zhang, Libinmax
21SalinitySalZhang, Libin
22Salinity, standard deviationSal std dev±Zhang, Libin
23Temperature, waterTemp°CZhang, Libin
24Temperature, water, standard deviationTemp std dev±Zhang, Libin
25pH, total scalepHTZhang, Libin
26pH, standard deviationpH std dev±Zhang, Libintotal scale
27Alkalinity, totalATµmol/kgZhang, Libin
28Alkalinity, total, standard deviationAT std dev±Zhang, Libin
29Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmZhang, LibinCalculated using CO2SYS
30Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Zhang, LibinCalculated using CO2SYS
31Calcite saturation stateOmega CalZhang, LibinCalculated using CO2SYS
32Calcite saturation state, standard deviationOmega Cal std dev±Zhang, LibinCalculated using CO2SYS
33Aragonite saturation stateOmega ArgZhang, LibinCalculated using CO2SYS
34Aragonite saturation state, standard deviationOmega Arg std dev±Zhang, LibinCalculated using CO2SYS
35Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
36Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
37Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
38Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
40Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
42Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
44Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
46Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
48Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
50Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
98 data points

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