Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Grđan, Sanja; Dupont, Sam; Glamuzina, Luka; Cetinić, Ana Bratoš (2025): Banded dye murex, Hexaplex trunculus measurements of total weight, soft tissue weight and net calcification rate in males and females over the 310 day ocean acidification experiment [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.980753 (DOI registration in progress)

Always quote citation above when using data! You can download the citation in several formats below.

Published: 2025-04-14

RIS CitationBibTeX Citation ShareShow MapGoogle Earth

Abstract:
Physiological traits of banded dye murex were measured during the exposure to a range of pH over the course of 310 days. Gastropods were collected in Bistrina Bay, part of the Mali Ston Bay in the Southeastern Adriatic Sea (42°52'19.1 N 17°42'02.3 E). Experiment was performed in Laboratory for Mariculture, University of Dubrovnik. Banded dye murexes were maintained in nine treatment tanks (volume 130L) with a flow-through water system with filtered, UV-sterilized, and aerated ambient seawater pumped directly from the Bistrina Bay adjacent to the laboratory facilities. Nine pH treatments were assigned to tanks, ranging from pHT 7.95 to 7.22. pH was manipulated by bubling pure CO2 gas, controlled with pH computers (Milwaukee MC122).Temperature, salinity, dissolved oxygen concentration were measured using multiparametric probes (YSI Pro 30 & Oxygen Handy Polaris, respectively). pH was measured on a total scale (pHT) by the potentiometric method with TRIS (2-amino-2-hydroxy-1,3-propanediol) buffer. Total alkalinity (TA, µmol kg-1) was determined with the potentiometric two-point open-cell 0.1 M HCl titration. Other seawater carbonate chemistry parameters (pCO2, ΩCa, ΩAr) were calculated based on known TA and pHT for a given salinity using CO2SYS software. Measurments of total weight were performed eight times during the experiment: day 28, 59, 91, 133, 172, 196, 236 & 310. Total wet weight was measured to the nearest 0.01 g on the top-load scale (Mettler toledo JL602-G/L) for the same individuals nine times over the course of experiment. Prior to weighing, snails were placed on absorbent blotting paper for approximately 20 minutes to remove excess water. The procedure was repeated eight times during the experiment (day 28, 59, 91, 133, 172, 196, 236, 310). Total weight growth rate (TWGR in g day-1) was calculated for each individual as the change in the shell weight between successive observation points divided by time. Net calcification rate was measured with a buoyant weight technique where the weight of the whole snails in seawater (buoyant weight) was determined by placing them on an improvised holder made of copper wire attached directly to the hook at the bottom of scale (Mettler toledo JL602-G/L). The scale was placed on a stand with a hole in the centre, under which was the container of seawater. Immediately before weighing, the snails were carefully forced to close the operculum to clear their mantle cavities of possible air. The balance was tared to compensate for the weight of the improvised holder, and the weight of the submerged snails was recorded to the nearest 0.01 g. The procedure was repeated seven times during the experiment (day 59, 91, 133, 172, 196, 236, 310). To obtain estimates of shell weight from immersed weight, a regression between shell weight and buoyant weight was performed. Net calcification rate (NCR in g day-1) was calculated for each individual as the change in shell weight between successive observation points divided by time. The soft body weight was calculated for each gastropod as the difference between the total weight and the shell weight. Soft body growth rate (STWGR in g day-1) was calculated for each individual as the difference in soft body weight between successive observation points divided by time. At the end of the experiment, specimens from all treatments were sampled and frozen until further analysis. For the sex determination, shells were cracked with a vice to expose the soft tissue. Males were identified by the presence of a penis behind the right tentacle, females by the vaginal opening. As temperature was varying naturally over the course of the experiment, statistical analysis was divided into periods to account for the modulating effect of the temperature.
Carbonate Chemistry data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-02-26.
Keyword(s):
Adriatic Sea; long-term; net calcification; sex effect; soft tissue; total weight
Source:
Grđan, Sanja; Dupont, Sam; Glamuzina, Luka; Bratoš Cetinić, Ana (2024): Seawater carbonate chemistry and shell growth rate of Hexaplex trunculus, an important predatory gastropod in benthic communities of Mali Ston Bay [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.965891
References:
Dickson, Andrew G (1993): pH buffers for sea water media based on the total hydrogen ion concentration scale. Deep Sea Research Part I: Oceanographic Research Papers, 40(1), 107-118, https://doi.org/10.1016/0967-0637(93)90055-8
Dickson, Andrew G; Millero, Frank J (1987): A comparison of the equilibrium constants for the dissociation of carbonic acid in seawater media. Deep Sea Research Part A. Oceanographic Research Papers, 34(10), 1733-1743, https://doi.org/10.1016/0198-0149(87)90021-5
Dickson, Andrew G; Sabine, Christopher L; Christian, J R (2007): Guide to Best Practices for Ocean CO2 Measurements. PICES Special Publication, 3, 191 pp, hdl:10013/epic.51789.d001
Grđan, Sanja; Dupont, Sam; Glamuzina, Luka; Bratoš Cetinić, Ana (2023): Potential for acclimation of banded-dye murex, Hexaplex trunculus (Linnaeus, 1758) after long-term exposure to low pH. Naše more, 70(3), 137-146, https://doi.org/10.17818/NM/2023/SI1
Lewis, Ernie R; Wallace, Douglas WR (1998): Program Developed for CO2 System Calculations. Environmental System Science Data Infrastructure for a Virtual Ecosystem, https://doi.org/10.15485/1464255
Palmer, A R (1982): Growth in marine gastropods: A non-destructive technique for independently measuring shell and body weight. Malacologia, 23, 63-67
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 42.871900 * Longitude: 17.700600
Date/Time Start: 2020-08-01T00:00:00 * Date/Time End: 2020-08-31T00:00:00
Event(s):
Bay_Bistrina * Latitude: 42.871900 * Longitude: 17.700600 * Date/Time Start: 2020-08-01T00:00:00 * Date/Time End: 2020-08-31T00:00:00 * Method/Device: Experiment (EXP)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeGrđan, Sanja
2Species, unique identificationSpecies UIDGrđan, Sanja
3Species, unique identification (URI)Species UID (URI)Grđan, Sanja
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Grđan, Sanja
5Treatment: pHT:pHGrđan, Sanja
6IdentificationIDGrđan, Sanjagastropod
7SexSexGrđan, Sanja
8Growth rateµmg/dayGrđan, Sanjasoft tissue weight, measured at experimental day 91
9Growth rateµmg/dayGrđan, Sanjasoft tissue weight, measured at experimental day 133
10Growth rateµmg/dayGrđan, Sanjasoft tissue weight, measured at experimental day 172
11Growth rateµmg/dayGrđan, Sanjasoft tissue weight, measured at experimental day 196
12Growth rateµmg/dayGrđan, Sanjasoft tissue weight, measured at experimental day 236
13Growth rateµmg/dayGrđan, Sanjasoft tissue weight, measured at experimental day 310
14Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 28
15Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 59
16Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 91
17Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 133
18Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 172
19Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 196
20Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 236
21Growth rateµmg/dayGrđan, Sanjatotal weight, measured at experimental day 310
22Calcification rateCalc ratemg/dayGrđan, Sanjanet, measured at experimental day 91
23Calcification rateCalc ratemg/dayGrđan, Sanjanet, measured at experimental day 133
24Calcification rateCalc ratemg/dayGrđan, Sanjanet, measured at experimental day 172
25Calcification rateCalc ratemg/dayGrđan, Sanjanet, measured at experimental day 196
26Calcification rateCalc ratemg/dayGrđan, Sanjanet, measured at experimental day 236
27Calcification rateCalc ratemg/dayGrđan, Sanjanet, measured at experimental day 310
28pHpHGrđan, SanjaPotentiometricNBS scale
29pH, standard deviationpH std dev±Grđan, SanjaPotentiometricNBS scale
30pHpHGrđan, SanjaPotentiometrictotal scale
31pH, standard deviationpH std dev±Grđan, SanjaPotentiometrictotal scale
32SalinitySalGrđan, Sanja
33Salinity, standard deviationSal std dev±Grđan, Sanja
34Temperature, waterTemp°CGrđan, Sanja
35Temperature, water, standard deviationTemp std dev±Grđan, Sanja
36Alkalinity, totalATµmol/kgGrđan, SanjaPotentiometric titration
37Alkalinity, total, standard deviationAT std dev±Grđan, SanjaPotentiometric titration
38Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGrđan, SanjaCalculated using CO2SYS
39Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Grđan, SanjaCalculated using CO2SYS
40Calcite saturation stateOmega CalGrđan, SanjaCalculated using CO2SYS
41Calcite saturation state, standard deviationOmega Cal std dev±Grđan, SanjaCalculated using CO2SYS
42Aragonite saturation stateOmega ArgGrđan, SanjaCalculated using CO2SYS
43Aragonite saturation state, standard deviationOmega Arg std dev±Grđan, SanjaCalculated using CO2SYS
44Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Carbon dioxide, standard deviationCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
47Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Fugacity of carbon dioxide in seawater, standard deviationfCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
49Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
51Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Bicarbonate ion, standard deviation[HCO3]- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
53Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54Carbonate ion, standard deviation[CO3]2- std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
55Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Carbon, inorganic, dissolved, standard deviationDIC std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
57Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Aragonite saturation state, standard deviationOmega Arg std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
59Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Calcite saturation state, standard deviationOmega Cal std dev±Yang, YanCalculated using seacarb after Orr et al. (2018)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
20068 data points

Download Data (login required; moratorium until 2027-04-01)

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML (shows only first 2000 rows)