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Frommel, Andrea Y; Ghanizadeh-Kazerouni, Ensiyeh; Dichiera, Angelina; Hunt, Brian P V; Brauner, Colin J (2025): Seawater carbonate chemistry and seawater transition in Chinook salmon smolts [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.974716

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Published: 2025-01-21 • DOI registered: 2025-02-19

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Abstract:
This study seeks to explore the impacts of warming and ocean acidification on the transition of life in freshwater to life at sea in Chinook salmon smolts. In a fully factorial experiment, we transitioned Chinook salmon from fresh- to seawater at current and future conditions of temperature (13 ◦C and 16 ◦C, respectively) and ocean acidification (400 and 1400 atm CO2), including a fluctuating CO2 treatment (between control and high CO2) that may be more representative of natural environmental conditions associated with upwelling and tidal cycling.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-01-20.
Keyword(s):
Animalia; Chordata; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; Laboratory strains; Nekton; Not applicable; Other studied parameter or process; Pelagos; Single species; Temperature
Related to:
Frommel, Andrea Y; Ghanizadeh-Kazerouni, Ensiyeh; Dichiera, Angelina; Hunt, Brian P V; Brauner, Colin J (2024): Effects of ocean warming with stable and fluctuating ocean acidification on seawater transition in Chinook salmon smolts. Science of the Total Environment, 955, 177185, https://doi.org/10.1016/j.scitotenv.2024.177185
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Date/Time Start: 2020-07-02T13:00:00 * Date/Time End: 2020-07-20T16:20:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeFrommel, Andrea Y
2DATE/TIMEDate/TimeFrommel, Andrea YGeocode
3IdentificationIDFrommel, Andrea YTank
4TreatmentTreatFrommel, Andrea Y
5Treatment: temperatureT:temp°CFrommel, Andrea Y
6TreatmentTreatFrommel, Andrea YCO2
7IdentificationIDFrommel, Andrea YFish
8MassMassgFrommel, Andrea Y
9Fish, fork lengthFish FLmmFrommel, Andrea Y
10HaematocritHt%Frommel, Andrea Y
11Fulton's condition factorKFrommel, Andrea Y
12Time in daysTime ddaysFrommel, Andrea Y
13Chloride in plasmaPlasma [Cl-]mmol/lFrommel, Andrea Y
14Sodium in plasmaPlasma [Na+]mmol/lFrommel, Andrea Y
15Sodium/Potassium adenosine triphosphatase gene expressionNa/K-ATPaseFrommel, Andrea Yfresh water isoform NKA alpha1a
16Sodium/Potassium adenosine triphosphatase gene expressionNa/K-ATPaseFrommel, Andrea Yseawater isoform NKA alpha1b
17Sample IDSample IDFrommel, Andrea Y
18Quantity of immunolabeled proteinsQuantity immunolabeled protFrommel, Andrea YSodium/Potassium adenosine triphosphatase??alpha1a
19Quantity of immunolabeled proteinsQuantity immunolabeled protFrommel, Andrea YSodium/Potassium adenosine triphosphatase??alpha1b
20Quantity of immunolabeled proteinsQuantity immunolabeled protFrommel, Andrea YNa+/K+/2Cl co-transporter
21SalinitySalFrommel, Andrea Y
22Temperature, waterTemp°CFrommel, Andrea Y
23Temperature, water, standard deviationTemp std dev±Frommel, Andrea Y
24pH, total scalepHTFrommel, Andrea Y
25pH, standard deviationpH std dev±Frommel, Andrea Ytotal scale
26pH, total scalepHTFrommel, Andrea Ymax
27pH, total scalepHTFrommel, Andrea Ymin
28Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFrommel, Andrea YCalculated using CO2SYS
29Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Frommel, Andrea YCalculated using CO2SYS
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFrommel, Andrea YCalculated using CO2SYSmax
31Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmFrommel, Andrea YCalculated using CO2SYSmin
32Carbon, inorganic, dissolvedDICµmol/kgFrommel, Andrea Y
33Carbon, inorganic, dissolved, standard deviationDIC std dev±Frommel, Andrea Y
34Carbon, inorganic, dissolvedDICµmol/kgFrommel, Andrea Ymax
35Carbon, inorganic, dissolvedDICµmol/kgFrommel, Andrea Ymin
36Alkalinity, totalATµmol/kgFrommel, Andrea YCalculated using CO2SYS
37Alkalinity, total, standard deviationAT std dev±Frommel, Andrea YCalculated using CO2SYS
38Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
39Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
40Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
41Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
42Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
23523 data points

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