Citation:

PANGAEA.974407

Name: Seawater carbonate chemistry and growth and physiology of strain CCMP 1334 of the marine cyanobacterium Synechococcus (Cyanophyceae)
Published: 2025-01-07
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Bacteria; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Cyanobacteria; Growth/Morphology; Laboratory experiment; Laboratory strains; Macro-nutrients; Not applicable; Pelagos; Phytoplankton; Primary production/Photosynthesis; Respiration; Single species; Synechococcus sp.; Temperature

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Published: 2025-01-07 • DOI registered: 2025-02-05

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Abstract:

The marine cyanobacterium Synecococcus sp. (CCMP 1334) was grown in a continuous culture system on a 12:12 h light:dark cycle at all combinations of low and high pCO2 (400 and 1000 ppmv, respectively), nutrient availability (nitrate-limited and nutrient-replete conditions), and temperatures of 21, 24, 28, 32, and 35°C.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-23.

Keyword(s):

Bacteria; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Cyanobacteria; Growth/Morphology; Laboratory experiment; Laboratory strains; Macro-nutrients; Not applicable; Pelagos; Phytoplankton; Primary production/Photosynthesis; Respiration; Single species; Synechococcus sp.; Temperature

Related to:

Sharbaugh, Alyssa K; Laws, Edward A (2024): Interactive effects of CO 2 , temperature, and nitrate limitation on the growth and physiology of strain CCMP 1334 of the marine cyanobacterium Synechococcus (Cyanophyceae). Journal of Phycology, jpy.13531, https://doi.org/10.1111/jpy.13531

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Comment
1	Type of study	Study type		Laws, Edward A
2	Species	Species		Laws, Edward A
3	Treatment	Treat		Laws, Edward A	Nitrate availability
4	Treatment: carbon dioxide, partial pressure	T:pCO2	ppmv	Laws, Edward A
5	Temperature, water	Temp	°C	Laws, Edward A
6	Growth rate	µ	1/day	Laws, Edward A	median
7	Median absolute deviation	MAD	±	Laws, Edward A	growth rate
8	Alkalinity, total	AT	µmol/kg	Laws, Edward A
9	pH, total scale	pHT		Laws, Edward A
10	Carbon/Nitrogen ratio	C/N		Laws, Edward A	lights off
11	Carbon/Nitrogen ratio	C/N		Laws, Edward A	lights on
12	Carbon/Chlorophyll a ratio	C/Chl a		Laws, Edward A	lights off
13	Carbon/Chlorophyll a ratio	C/Chl a		Laws, Edward A	lights on
14	Phycoerythrin/Chlorophyll a ratio	Phycoe/Chl a		Laws, Edward A	lights off
15	Phycoerythrin/Chlorophyll a ratio	Phycoe/Chl a		Laws, Edward A	lights on
16	Productivity index (carbon/chlorophyll a)	PI	g/g/h	Laws, Edward A	median
17	Median absolute deviation	MAD	±	Laws, Edward A	productivity index
18	Respiration	Resp	1/day	Laws, Edward A	median
19	Median absolute deviation	MAD	±	Laws, Edward A	Respisration rate
20	Salinity	Sal		Laws, Edward A
21	Carbonate system computation flag	CSC flag		Yang, Yan
22	Carbon dioxide	CO2	µmol/kg	Yang, Yan
23	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan
24	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan
25	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan
26	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan
27	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan
28	Aragonite saturation state	Omega Arg		Yang, Yan
29	Calcite saturation state	Omega Cal		Yang, Yan

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

578 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species	3 Treat (Nitrate availability)	4 T:pCO2 [ppmv]	5 Temp [°C]	6 µ [1/day] (median)	7 MAD [±] (growth rate)	8 AT [µmol/kg]	9 pHT	10 C/N (lights off)	11 C/N (lights on)	12 C/Chl a (lights off)	13 C/Chl a (lights on)	14 Phycoe/Chl a (lights off)	15 Phycoe/Chl a (lights on)	16 PI [g/g/h] (median)	17 MAD [±] (productivity index)	18 Resp [1/day] (median)	19 MAD [±] (Respisration rate)	20 Sal	21 CSC flag	22 CO2 [µmol/kg]	23 fCO2water_SST_wet [µatm]	24 pCO2water_SST_wet [µatm]	25 [HCO3]- [µmol/kg]	26 [CO3]2- [µmol/kg]	27 DIC [µmol/kg]	28 Omega Arg	29 Omega Cal
laboratory	Synecococcus sp.	Nutrient Replete	400	21	0.336	0.1010	2430	8.07	6.85	6.14	190	171	5.93	7.66	6.33	1.790	0.1170	0.0127	35	8	12.44	394.61	395.93	1917.41	210.10	2139.96	3.28	5.03
laboratory	Synecococcus sp.	Nutrient Replete	400	24	0.421	0.1410	2460	8.07	7.10	6.41	204	170	4.23	4.95	7.64	0.625	0.1250	0.0239	35	8	11.57	397.39	398.67	1895.91	232.22	2139.70	3.67	5.58
laboratory	Synecococcus sp.	Nutrient Replete	400	28	0.606	0.0878	2530	8.07	5.52	4.52	127	109	2.18	1.20	6.26	0.319	0.2640	0.0574	35	8	10.67	404.36	405.61	1885.20	267.24	2163.11	4.30	6.47
laboratory	Synecococcus sp.	Nutrient Replete	400	32	1.110	0.2030	2490	8.05	5.38	4.58	135	120	1.00	1.19	5.95	1.460	0.2600	0.0664	35	8	9.98	414.73	415.95	1807.12	282.42	2099.51	4.65	6.90
laboratory	Synecococcus sp.	Nutrient Replete	400	35	1.030	0.1320	2510	8.05	5.71	4.93	93	105	4.05	3.13	5.74	2.130	0.2500	0.0905	35	8	9.30	411.94	413.11	1767.82	307.19	2084.31	5.16	7.57
laboratory	Synecococcus sp.	Nutrient Replete	1000	21	0.390	0.1110	2440	7.73	6.80	6.21	185	153	5.84	4.37	7.12	1.140	0.0946	0.0100	35	8	30.87	979.19	982.48	2174.79	108.93	2314.59	1.70	2.61
laboratory	Synecococcus sp.	Nutrient Replete	1000	24	0.476	0.2260	2440	7.73	6.78	5.50	126	109	5.47	3.98	8.23	3.100	0.2420	0.0600	35	8	28.69	985.00	988.20	2148.05	120.26	2297.00	1.90	2.89
laboratory	Synecococcus sp.	Nutrient Replete	1000	28	0.717	0.0868	2440	7.73	6.46	4.94	113	91	9.51	13.45	7.37	1.550	0.3360	0.0528	35	8	26.11	989.77	992.82	2109.23	136.67	2272.01	2.20	3.31
laboratory	Synecococcus sp.	Nutrient Replete	1000	32	1.120	0.3280	2430	7.72	6.24	4.65	87	68	3.67	3.85	9.59	1.710	0.3490	0.0624	35	8	24.38	1013.29	1016.27	2065.16	150.96	2240.50	2.49	3.69
laboratory	Synecococcus sp.	Nutrient Replete	1000	35	1.170	0.1950	2450	7.72	5.47	4.41	72	65	4.35	1.90	8.69	1.850	0.3560	0.1090	35	8	23.03	1020.54	1023.44	2048.50	166.50	2238.02	2.80	4.10
laboratory	Synecococcus sp.	Nitrate limited	400	21	0.193	0.1010	2420	8.07	8.53	7.77	405	254	3.85	3.08	5.13	1.240	0.0828	0.0226	35	8	12.39	392.92	394.24	1909.21	209.21	2130.81	3.26	5.01
laboratory	Synecococcus sp.	Nitrate limited	400	24	0.176	0.0259	2430	8.06	8.39	7.39	324	302	4.62	4.67	6.07	1.180	0.1140	0.0276	35	8	11.75	403.59	404.90	1881.69	225.23	2118.67	3.56	5.41
laboratory	Synecococcus sp.	Nitrate limited	400	28	0.243	0.0359	2450	8.06	9.13	7.49	204	178	5.11	6.36	5.16	0.594	0.1960	0.0331	35	8	10.62	402.46	403.70	1833.62	254.01	2098.25	4.09	6.15
laboratory	Synecococcus sp.	Nitrate limited	400	32	0.662	0.0783	2450	8.05	8.40	5.75	149	128	6.32	7.48	8.19	0.720	0.1310	0.0274	35	8	9.81	407.74	408.94	1776.64	277.65	2064.11	4.58	6.78
laboratory	Synecococcus sp.	Nitrate limited	400	35	0.514	0.0752	2450	8.04	7.43	5.37	126	87	4.64	4.85	5.85	0.276	0.2360	0.0271	35	8	9.34	413.74	414.92	1735.14	294.65	2039.13	4.95	7.26
laboratory	Synecococcus sp.	Nitrate limited	1000	21	0.208	0.0761	2420	7.73	8.83	8.24	550	472			8.90	2.110	0.0706	0.0075	35	8	30.62	971.00	974.27	2156.61	108.02	2295.24	1.69	2.59
laboratory	Synecococcus sp.	Nitrate limited	1000	24	0.195	0.0426	2430	7.73	8.30	7.28	287	247	4.11	4.36	6.78	0.984	0.1280	0.0224	35	8	28.57	980.88	984.06	2139.06	119.76	2287.38	1.89	2.88
laboratory	Synecococcus sp.	Nitrate limited	1000	28	0.251	0.0482	2450	7.73	8.82	7.21	207	172	5.17	4.72	5.33	0.332	0.1670	0.0105	35	8	26.22	993.92	996.99	2118.08	137.24	2281.54	2.21	3.32
laboratory	Synecococcus sp.	Nitrate limited	1000	32	0.611	0.1070	2450	7.72	6.97	5.09	110	101	5.15	7.14	6.60	0.347	0.2260	0.0326	35	8	24.59	1021.85	1024.86	2082.61	152.23	2259.43	2.51	3.72
laboratory	Synecococcus sp.	Nitrate limited	1000	35	0.535	0.0694	2450	7.72	7.66	5.28	131	113	4.75	5.76	6.50	0.713	0.3260	0.0399	35	8	23.03	1020.54	1023.44	2048.50	166.50	2238.02	2.80	4.10