Alcantar Marina W mwalcantar@alaska.edu University of Alaska Fairbanks https://ror.org/01j7nq853 Hetrick Jeff Ramsay Jacqueline Kelley Amanda L University of Alaska Fairbanks https://ror.org/01j7nq853 2025 Seawater carbonate chemistry and larva size, elemental composition of Pacific razor clams (Siliqua patula) in Alaska dataset https://doi.org/10.1594/PANGAEA.974367 2025-01-03T08:32:57 This study examines the effects of OA on embryonic and larval Pacific razor clams (Siliqua patula), a bivalve that produces a concretion during early shell development. Larvae were spawned and cultured over 28 days under three pCO2 treatments: a static high pCO2 of 867 matm, a variable, diel pCO2 of 357 to 867 matm, and an ambient pCO2 of 357 matm. This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-01-03. Alcantar Marina W mwalcantar@alaska.edu Hetrick Jeff Ramsay Jacqueline Kelley Amanda L 2024 Examining the impacts of elevated, variable pCO2 on larval Pacific razor clams (Siliqua patula) in Alaska journal article Frontiers in Marine Science 11 https://doi.org/10.3389/fmars.2024.1253702 1253702 Nisumaa Anne-Marin annemarin@gmail.com Pesant Stephane pesant@ebi.ac.uk 0000-0002-4936-5209 Bellerby Richard G J Richard.Bellerby@niva.no http://www2.bjerknes.uib.no/pages.asp?pid=21&kat=5&lang=2 Delille Bruno bruno.delille@uliege.be 0000-0003-0502-8101 Middelburg Jack J jmiddelburg@nioo.knaw.nl 0000-0003-3601-9072 Orr James C j.orr@iaea.org 0000-0002-8707-7080 Riebesell Ulf uriebesell@geomar.de https://www.geomar.de/uriebesell/ 0000-0002-9442-452X Tyrrell Toby t.tyrrell@noc.soton.ac.uk Wolf-Gladrow Dieter A dieter.wolf-gladrow@awi.de https://www.awi.de/en/about-us/organisation/staff/single-view/dieter-wolf-gladrow.html 0000-0001-9531-8668 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2010 EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification journal article Earth System Science Data 2(2) https://doi.org/10.5194/essd-2-167-2010 167-175 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Brockmann Patrick Galdino Carolina Schindler Uwe uschindler@pangaea.de https://blog.thetaphi.de/ 0000-0002-1900-4162 Gazeau Frédéric frederic.gazeau@imev-mer.fr 0000-0001-8807-4597 2024 An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal journal article Earth System Science Data 16(8) https://doi.org/10.5194/essd-16-3771-2024 3771-3780 Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Hansson L Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 2016 Data compilation on the biological response to ocean acidification: an update journal article Earth System Science Data 8(1) https://doi.org/10.5194/essd-8-79-2016 79-87 Gattuso Jean-Pierre jean-pierre.gattuso@imev-mer.fr 0000-0002-4533-4114 Epitalon Jean-Marie Lavigne Héloïse hlavigne@naturalsciences.be 0009-0006-6766-0638 Orr James James.Orr@lsce.ipsl.fr Gentili Bernard bernard.gentili@orange.fr http://omtab.obs-vlfr.fr/personnes/z_gent_be/gentili.php Hagens Mathilde 0000-0003-3980-1043 Hofmann Andreas Mueller Jens-Daniel Proye Aurélien Rae James 0000-0003-3904-2526 Soetaert Karline karline.soetaert@nioz.nl 0000-0003-4603-7100 2024 seacarb: seawater carbonate chemistry with R. R package version 3.3.3 other https://cran.r-project.org/web/packages/seacarb/index.html -152.46125 -152.46125 60.2819 60.2819 -152.46125 60.2819 2018-06-28T00:00:00 2018-06-28T00:00:00 OA-ICC Ocean Acidification International Coordination Centre https://www.iaea.org/services/oa-icc/science-and-collaboration/data-access-and-management International Atomic Energy Agency IAEA http://www.iaea.org https://ror.org/02zt1gg83 Polly_Creek_Beach 60.2819 -152.46125 2018-06-28T00:00:00 3756 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Type of study Study type type Alcantar Marina W mwalcantar@alaska.edu Study type Species, unique identification Species UID species Alcantar Marina W mwalcantar@alaska.edu Species UID Species, unique identification (URI) Species UID (URI) species Alcantar Marina W mwalcantar@alaska.edu Species UID (URI) Species, unique identification (Semantic URI) Species UID (Semantic URI) species Alcantar Marina W mwalcantar@alaska.edu Species UID (Semantic URI) Time in days Time d days Time T http://dbpedia.org/resource/Time Alcantar Marina W mwalcantar@alaska.edu Time d [days] Treatment Treat treatment Alcantar Marina W mwalcantar@alaska.edu Treat Area Area µm**2 Area http://dbpedia.org/resource/Area Alcantar Marina W mwalcantar@alaska.edu Area [µm**2] Area, standard deviation Area std dev ± Area http://dbpedia.org/resource/Area standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu Area std dev [±] Length l µm Length L http://dbpedia.org/resource/Length Alcantar Marina W mwalcantar@alaska.edu l [µm] Length, standard deviation l std dev ± Length L http://dbpedia.org/resource/Length standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu l std dev [±] Width w µm width http://purl.obolibrary.org/obo/PATO_0000921 Length L http://dbpedia.org/resource/Length Alcantar Marina W mwalcantar@alaska.edu w [µm] Width, standard deviation w std dev ± width http://purl.obolibrary.org/obo/PATO_0000921 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu w std dev [±] Number of samples Samples # number Abundance or Count Alcantar Marina W mwalcantar@alaska.edu Samples [#] Elements Elements Alcantar Marina W mwalcantar@alaska.edu Elements Location Location location Alcantar Marina W mwalcantar@alaska.edu on the shell Location (on the shell) Percentage Perc % percentage Dimensionless Ratio ψ Alcantar Marina W mwalcantar@alaska.edu shell composition Perc [%] (shell composition) Percentage, standard deviation Perc std dev ± percentage standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu shell composition Perc std dev [±] (shell composition) Percentage, standard error Perc std e ± percentage standard error std e https://en.wikipedia.org/wiki/Standard_error Alcantar Marina W mwalcantar@alaska.edu shell composition Perc std e [±] (shell composition) Salinity Sal salinity http://purl.obolibrary.org/obo/PATO_0085001 Alcantar Marina W mwalcantar@alaska.edu Sal Salinity, standard deviation Sal std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu Sal std dev [±] pH, total scale pHT Alcantar Marina W mwalcantar@alaska.edu pHT pH, standard deviation pH std dev ± standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu total scale pH std dev [±] (total scale) Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Alcantar Marina W mwalcantar@alaska.edu pCO2water_SST_wet [µatm] Partial pressure of carbon dioxide, standard deviation pCO2 std dev ± partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu pCO2 std dev [±] Aragonite saturation state Omega Arg aragonite saturation state Alcantar Marina W mwalcantar@alaska.edu Omega Arg Aragonite saturation state, standard deviation Omega Arg std dev ± aragonite saturation state standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu Omega Arg std dev [±] Alkalinity, total AT µmol/l https://en.wikipedia.org/wiki/Alkalinity total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Alcantar Marina W mwalcantar@alaska.edu AT [µmol/l] Alkalinity, total, standard deviation AT std dev ± total https://www.oxforddictionaries.com/definition/american_english/total standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu AT std dev [±] Temperature, water Temp °C Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 Alcantar Marina W mwalcantar@alaska.edu Temp [°C] Temperature, water, standard deviation Temp std dev ± Temperature Θ http://dbpedia.org/resource/Temperature water http://purl.obolibrary.org/obo/CHEBI_15377 standard deviation std dev https://en.wikipedia.org/wiki/Standard_deviation Alcantar Marina W mwalcantar@alaska.edu Temp std dev [±] Carbonate system computation flag CSC flag Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CSC flag Carbon dioxide CO2 µmol/kg carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 Molar Concentration Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 CO2 [µmol/kg] Fugacity of carbon dioxide (water) at sea surface temperature (wet air) fCO2water_SST_wet µatm fugacity https://en.wikipedia.org/wiki/Fugacity carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 fCO2water_SST_wet [µatm] Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pCO2water_SST_wet µatm partial pressure carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526 water http://purl.obolibrary.org/obo/CHEBI_15377 Energy Density http://dbpedia.org/resource/Energy_density Force Per Area Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 pCO2water_SST_wet [µatm] Bicarbonate ion [HCO3]- µmol/kg Molar Concentration Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [HCO3]- [µmol/kg] Carbonate ion [CO3]2- µmol/kg Molar Concentration Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 [CO3]2- [µmol/kg] Carbon, inorganic, dissolved DIC µmol/kg carbon C https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:27594 dissolved http://purl.obolibrary.org/obo/PATO_0001986 Molar Concentration Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 DIC [µmol/kg] Alkalinity, total AT µmol/kg total https://www.oxforddictionaries.com/definition/american_english/total Molar Concentration Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 AT [µmol/kg] Aragonite saturation state Omega Arg aragonite saturation state Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Arg Calcite saturation state Omega Cal Yang Yan yangyan@xmu.edu.cn http://mel.xmu.edu.cn/en/ 0000-0003-4900-5606 Omega Cal CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Animalia Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria (<20 L) Calcification/Dissolution Coast and continental shelf Growth/Morphology Laboratory experiment Mollusca North Pacific Ocean acidification Pelagos Siliqua patula Single species Temperate Zooplankton author10403 author10414 author107699 author107700 author109099 author109100 author109101 author109102 author21564 author22144 author22148 author22159 author22414 author22445 author24922 author27217 author28754 author29138 author29176 author32865 author34379 author39204 author48750 author51658 author55788 author56746 author59171 author59172 author59173 author69140 curlevel30 event3209428 geocode1599 geocode1600 geocode1601 inst20253 inst21456 journal16590 journal16757 license21 param123353 param125247 param135419 param135431 param136010 param136777 param143493 param1720 param185520 param24304 param26954 param27332 param49312 param49313 param510679 param521306 param534369 param54293 param54294 param716 param717 param7646 param7647 param80114 param82111 param82364 param82365 param82366 param83476 param87073 param87459 param87464 param87725 param87729 param91410 param96278 pi109099 pi48750 project4173 ref124625 ref128879 ref131245 ref31273 ref79258 term1073290 term1073490 term1073493 term2606205 term2663532 term2664100 term2698012 term37647 term37764 term38253 term38477 term38527 term38841 term38844 term38851 term38855 term38858 term38860 term38874 term38878 term38887 term38888 term38892 term40646 term41013 term43298 term43770 term43794 term43821 term43834 term43863 term43972 term43975 term43997 term44025 term44030 term48166 term48176 term49384 term49506 term73928 term75362