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Alcantar, Marina W; Hetrick, Jeff; Ramsay, Jacqueline; Kelley, Amanda L (2025): Seawater carbonate chemistry and larva size, elemental composition of Pacific razor clams (Siliqua patula) in Alaska [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.974367

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Published: 2025-01-03DOI registered: 2025-02-01

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Abstract:
This study examines the effects of OA on embryonic and larval Pacific razor clams (Siliqua patula), a bivalve that produces a concretion during early shell development. Larvae were spawned and cultured over 28 days under three pCO2 treatments: a static high pCO2 of 867 matm, a variable, diel pCO2 of 357 to 867 matm, and an ambient pCO2 of 357 matm.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-01-03.
Keyword(s):
Animalia; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Coast and continental shelf; Growth/Morphology; Laboratory experiment; Mollusca; North Pacific; Ocean acidification; Pelagos; Siliqua patula; Single species; Temperate; Zooplankton
Related to:
Alcantar, Marina W; Hetrick, Jeff; Ramsay, Jacqueline; Kelley, Amanda L (2024): Examining the impacts of elevated, variable pCO2 on larval Pacific razor clams (Siliqua patula) in Alaska. Frontiers in Marine Science, 11, 1253702, https://doi.org/10.3389/fmars.2024.1253702
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 60.281900 * Longitude: -152.461250
Date/Time Start: 2018-06-28T00:00:00 * Date/Time End: 2018-06-28T00:00:00
Event(s):
Polly_Creek_Beach * Latitude: 60.281900 * Longitude: -152.461250 * Date/Time: 2018-06-28T00:00:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeAlcantar, Marina W
2Species, unique identificationSpecies UIDAlcantar, Marina W
3Species, unique identification (URI)Species UID (URI)Alcantar, Marina W
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Alcantar, Marina W
5Time in daysTime ddaysAlcantar, Marina W
6TreatmentTreatAlcantar, Marina W
7AreaAreaµm2Alcantar, Marina W
8Area, standard deviationArea std dev±Alcantar, Marina W
9LengthlµmAlcantar, Marina W
10Length, standard deviationl std dev±Alcantar, Marina W
11WidthwµmAlcantar, Marina W
12Width, standard deviationw std dev±Alcantar, Marina W
13Number of samplesSamples#Alcantar, Marina W
14ElementsElementsAlcantar, Marina W
15LocationLocationAlcantar, Marina Won the shell
16PercentagePerc%Alcantar, Marina Wshell composition
17Percentage, standard deviationPerc std dev±Alcantar, Marina Wshell composition
18Percentage, standard errorPerc std e±Alcantar, Marina Wshell composition
19SalinitySalAlcantar, Marina W
20Salinity, standard deviationSal std dev±Alcantar, Marina W
21pH, total scalepHTAlcantar, Marina W
22pH, standard deviationpH std dev±Alcantar, Marina Wtotal scale
23Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmAlcantar, Marina W
24Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Alcantar, Marina W
25Aragonite saturation stateOmega ArgAlcantar, Marina W
26Aragonite saturation state, standard deviationOmega Arg std dev±Alcantar, Marina W
27Alkalinity, totalATµmol/lAlcantar, Marina W
28Alkalinity, total, standard deviationAT std dev±Alcantar, Marina W
29Temperature, waterTemp°CAlcantar, Marina W
30Temperature, water, standard deviationTemp std dev±Alcantar, Marina W
31Carbonate system computation flagCSC flagYang, Yan
32Carbon dioxideCO2µmol/kgYang, Yan
33Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, Yan
34Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, Yan
35Bicarbonate ion[HCO3]-µmol/kgYang, Yan
36Carbonate ion[CO3]2-µmol/kgYang, Yan
37Carbon, inorganic, dissolvedDICµmol/kgYang, Yan
38Alkalinity, totalATµmol/kgYang, Yan
39Aragonite saturation stateOmega ArgYang, Yan
40Calcite saturation stateOmega CalYang, Yan
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
3756 data points

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