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Zhu, Yue; Lin, Qingming; Yang, Yao; Xia, Yanmei; Cai, Huidi; Feng, Xucong; Goncalves, Rodrigo J; Guan, WanChun (2024): Seawater carbonate chemistry and photosynthetic performance of dinoflagellate Prorocentrum donghaiense [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.974308 (DOI registration in progress)

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Abstract:
In this study, dinoflagellate Prorocentrum donghaiense, a typical HAB species, was exposed to varying concentrations of NPs (108.15 ± 8.52 nm) (0, 5, 10, and 15 mg L−1) and CO2 (low CO2: 417 ppm, pH: 8.00 and high CO2: 1045 ppm, pH: 7.73) for seven days to investigate the combined effects of OA and NPs.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-19.
Keyword(s):
Bottles or small containers/Aquaria (<20 L); Chromista; Growth/Morphology; Laboratory experiment; Laboratory strains; Myzozoa; Not applicable; Organic toxins; Other metabolic rates; Pelagos; Phytoplankton; Primary production/Photosynthesis; Prorocentrum donghaiense; Single species
Related to:
Zhu, Yue; Lin, Qingming; Yang, Yao; Xia, Yanmei; Cai, Huidi; Feng, Xucong; Gonçalves, Rodrigo J; Guan, WanChun (2024): Ocean acidification enhances the tolerance of dinoflagellate Prorocentrum donghaiense to nanoplastic-induced oxidative stress by modulating photosynthetic performance. Frontiers in Marine Science, 11, 1494930, https://doi.org/10.3389/fmars.2024.1494930
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Further details:
Supplementary material raw data
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeGuan, WanChun
2Species, unique identificationSpecies UIDGuan, WanChun
3TreatmentTreatGuan, WanChun
4NanoplasticNPsmg/LGuan, WanChun
5Time in daysTimedaysGuan, WanChun
6Cell densityCells#/mlGuan, WanChun
7Growth inhibitionGrowth inhib%Guan, WanChun
8Growth rateµ1/dayGuan, WanChun
9Chlorophyll a per cellChl a/cellpg/#Guan, WanChun
10Chlorophyll a, standard deviationChl a std dev±Guan, WanChun
11Carotenoids per cellCarotenoids/cellpg/#Guan, WanChun
12Carotenoids, standard deviationCarotenoids std dev±Guan, WanChun
13Carotenoids/Chlorophyll a ratioCarotenoids/Chl aGuan, WanChun
14Carotenoids/Chlorophyll a ratio, standard deviationCarotenoids/Chl a std dev±Guan, WanChun
15Superoxide dismutase activity, unit per cellSOD/cellU/#Guan, WanChun
16Superoxide dismutase activity, standard deviationSOD std dev±Guan, WanChun
17Malondialdehyde per cellMDA/cellnmol/#Guan, WanChun
18Malondialdehyde per cell, standard deviationMDA/cell std dev±Guan, WanChun
19IrradianceEµmol/m2/sGuan, WanChun
20Electron transport rate, relativerETRµmol e/m2/sGuan, WanChun
21Initial slope of rapid light curvealphaµmol electrons/µmol quantaGuan, WanChun
22Initial slope of rapid light curve, standard deviationalpha std dev±Guan, WanChun
23Maximal electron transport rate, relativerETR maxµmol e/m2/sGuan, WanChun
24Maximal electron transport rate, relative, standard deviationrETR max std dev±Guan, WanChun
25Light saturationEkµmol/m2/sGuan, WanChun
26Light saturation, standard deviationEk std dev±Guan, WanChun
27RatioRatioGuan, WanChunthe ratio of photosynthetic capacity to control
28SalinitySalGuan, WanChun
29Temperature, waterTemp°CGuan, WanChun
30Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmGuan, WanChun
31Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Guan, WanChun
32pH, NBS scalepH NBSGuan, WanChun
33pH, standard deviationpH std dev±Guan, WanChun
34Carbon, inorganic, dissolvedDICµmol/kgGuan, WanChunCalculated using CO2SYS
35Carbon, inorganic, dissolved, standard deviationDIC std dev±Guan, WanChunCalculated using CO2SYS
36Bicarbonate ion[HCO3]-µmol/kgGuan, WanChunCalculated using CO2SYS
37Bicarbonate ion, standard deviation[HCO3]- std dev±Guan, WanChunCalculated using CO2SYS
38Carbonate ion[CO3]2-µmol/kgGuan, WanChunCalculated using CO2SYS
39Carbonate ion, standard deviation[CO3]2- std dev±Guan, WanChunCalculated using CO2SYS
40Carbon dioxideCO2µmol/kgGuan, WanChunCalculated using CO2SYS
41Carbon dioxide, standard deviationCO2 std dev±Guan, WanChunCalculated using CO2SYS
42Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
43pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
44Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
8328 data points

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