Tamang Mandip mandip.tamang@dsmz.de DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH http://www.gbf.de/dsmz/dsmzhome.html https://ror.org/02tyer376 Huber Katharina katharina.huber@dsmz.de DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH http://www.gbf.de/dsmz/dsmzhome.html https://ror.org/02tyer376 Neumann-Schaal Meina meina.neumann-schaal@dsmz.de DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH http://www.gbf.de/dsmz/dsmzhome.html https://ror.org/02tyer376 Braunschweig Integrated Centre of Systems Biology BRICS Pester Michael mip17@dsmz.de 0000-0001-6296-4145 DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH http://www.gbf.de/dsmz/dsmzhome.html https://ror.org/02tyer376 Braunschweig Integrated Centre of Systems Biology BRICS 2025 Total bacteria and archaea number with different nematodes and substrates conditions dataset https://doi.org/10.1594/PANGAEA.974253 2025-01-13T09:17:59 Data contain the quantitative polymerase chain reaction (qPCR) numbers of total bacterial and archaeal 16S ribosomal RNA (16S rRNA) genes from 3 different nematode treatments and two different substrates conditions in the natural soil. In first treatment condition there was no addition of nematode, in second treatment bacterivorous nematode (Acrobeloides buetschlii) was added and in third treatment there was the addition of fungivorous nematode (Aphelenchoides saprophilus). Meanwhile, two different substrate conditions were: with and without maize litter. The natural soil for these experiments were collected from Dikopshof agricultural site (50°48′21″ N, 6°59′9″ E), Bonn, Germany. These qPCR numbers were collected in June and July, 2023 to look at the effect of nematode grazing in the bacterial and archaeal populations. The qPCR was performed using primer set of 1389F (5′-TGYACACACCGCCCGT-3′) and 1492R (5′-GGYTACCTTGTTACGACTT-3′) with 20 µl reactions on a qTOWER3G (Analytik-Jena, Jena, Germany). Tamang Mandip mandip.tamang@dsmz.de Sikorski Johannes 0000-0002-1890-5540 van Bommel Miriam Piecha Marc Urich Tim Ruess Liliane Huber Katharina katharina.huber@dsmz.de Neumann-Schaal Meina Pester Michael mip17@dsmz.de 0000-0001-6296-4145 2024 Succession of Bacteria and Archaea Within the Soil Micro-Food Web Shifts Soil Respiration Dynamics journal article Environmental Microbiology 26(11) https://doi.org/10.1111/1462-2920.70007 e70007 6.985833 6.985833 50.805833 50.805833 6.985833 50.805833 2021-08-01T00:00:00 2021-08-31T00:00:00 point German Research Foundation DFG http://www.dfg.de/en/ https://doi.org/10.13039/501100001659 441899689 SPP 2322: Systems ecology of soils – Energy Discharge Modulated by Microbiome and Boundary Conditions (SoilSystems) https://soilsystems.net/ German Research Foundation DFG http://www.dfg.de/en/ https://doi.org/10.13039/501100001659 HU3067/1-1 German Research Foundation DFG http://www.dfg.de/en/ https://doi.org/10.13039/501100001659 NE 2192/4-1 German Research Foundation DFG http://www.dfg.de/en/ https://doi.org/10.13039/501100001659 PE2147/6-1 German Research Foundation DFG http://www.dfg.de/en/ https://doi.org/10.13039/501100001659 RU 780/22-1 German Research Foundation DFG http://www.dfg.de/en/ https://doi.org/10.13039/501100001659 UR198/7-1 Dikopshof_agricultural_site 50.805833 6.985833 2021-08-01T00:00:00 2021-08-31T00:00:00 405 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Sample code/label Sample label Tamang Mandip mandip.tamang@dsmz.de Sample label Experimental treatment Exp treat Tamang Mandip mandip.tamang@dsmz.de Substrate Exp treat Treatment: duration T:duration days treatment duration http://purl.obolibrary.org/obo/PATO_0001309 Time T http://dbpedia.org/resource/Time Tamang Mandip mandip.tamang@dsmz.de T:duration [days] Treatment: grazers T:grazers treatment Tamang Mandip mandip.tamang@dsmz.de T:grazers Gene copies per gram sediment GCN per sed #/g Tamang Mandip mandip.tamang@dsmz.de numbers of total bacterial and archaeal 16S ribosomal RNA (16S rRNA) GCN per sed [#/g] CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable Laboratory experiment Nematode grazing quantitative PCR Trophic interactions author108975 author108976 author108977 author109346 author109347 author109348 author109349 author109350 author83149 author83642 award3498 award3536 award3537 award3538 award3539 award3540 curlevel30 event3207227 funder20472 geocode1599 geocode1600 geocode1601 inst1566 inst21874 journal5055 license21 param105161 param168972 param189911 param790 param82404 pi108975 ref131407 term1080072 term38841 term41013 term43975 term69727 term75220 term75221 topotype2