Citation:

PANGAEA.973879

Name: Seawater carbonate chemistry and intergenerational acclimation to environmental change in Acanthochromis polyacanthus
Published: 2024-12-03
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Acanthochromis polyacanthus; Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Laboratory experiment; Nekton; Pelagos; Single species; South Pacific; Tropical

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Published: 2024-12-03 • DOI registered: 2025-01-01

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Abstract:

Here using a multi-tissue approach we determine how variation in parental behavioural tolerance and exposure to elevated CO2 influences the developmental and intergenerational molecular responses of their offspring in the coral reef fish Acanthochromis polyacanthus to future ocean acidification (OA) conditions.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-03.

Keyword(s):

Acanthochromis polyacanthus; Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Laboratory experiment; Nekton; Pelagos; Single species; South Pacific; Tropical

Related to:

Suresh, Sneha; Welch, Megan J; Munday, Philip L; Ravasi, Timothy; Schunter, Celia (2024): Cross-talk between tissues is critical for intergenerational acclimation to environmental change in Acanthochromis polyacanthus. Communications Biology, 7(1), 1531, https://doi.org/10.1038/s42003-024-07241-y

Source:

Welch, Megan J; Munday, Philip L (2017): Seawater carbonate chemistry and olfactory behaviour of coral fish Acanthochromis polyacanthus [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.900086

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Further details:

PRJNA311159 - SRA - NCBI [dataset]. National Center for Biotechnology Information, https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA311159 (Brain RNA-Seq raw sequences)

PRJNA989422 - SRA - NCBI [dataset]. National Center for Biotechnology Information, https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA989422 (Gills and liver RNA-Seq raw sequences)

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: -18.640100 * Longitude: 146.492200

Event(s):

Great_Barrier_Reef_fish * Latitude: -18.640100 * Longitude: 146.492200

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device
1	Type of study	Study type		Schunter, Celia
2	Species, unique identification	Species UID		Schunter, Celia
3	Species, unique identification (URI)	Species UID (URI)		Schunter, Celia
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Schunter, Celia
5	Treatment	Treat		Schunter, Celia
6	pH, NBS scale	pH NBS		Schunter, Celia
7	pH, standard deviation	pH std dev	±	Schunter, Celia
8	Temperature, water	Temp	°C	Schunter, Celia
9	Temperature, water, standard deviation	Temp std dev	±	Schunter, Celia
10	Salinity	Sal		Schunter, Celia
11	Salinity, standard deviation	Sal std dev	±	Schunter, Celia
12	Alkalinity, total	AT	µmol/kg	Schunter, Celia
13	Alkalinity, total, standard deviation	AT std dev	±	Schunter, Celia
14	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Schunter, Celia
15	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Schunter, Celia
16	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
17	pH, total scale	pHT		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
18	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
19	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
20	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
21	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
22	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
23	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
24	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
25	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

46 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 Treat	6 pH NBS	7 pH std dev [±]	8 Temp [°C]	9 Temp std dev [±]	10 Sal	11 Sal std dev [±]	12 AT [µmol/kg]	13 AT std dev [±]	14 pCO2water_SST_wet [µatm]	15 pCO2 std dev [±]	16 CSC flag	17 pHT	18 CO2 [µmol/kg]	19 fCO2water_SST_wet [µatm]	20 pCO2water_SST_wet [µatm]	21 [HCO3]- [µmol/kg]	22 [CO3]2- [µmol/kg]	23 DIC [µmol/kg]	24 Omega Arg	25 Omega Cal
laboratory	Acanthochromis polyacanthus	marinespecies.org	urn:lsid:marinespecies.org:taxname:279469	elevated CO2	7.94	0.04	28.5	0.3	35.1	1.2	2223	152	754	92	26	7.79	19.73	757.36	759.68	1869.34	143.53	2032.60	2.32	3.48
laboratory	Acanthochromis polyacanthus	marinespecies.org	urn:lsid:marinespecies.org:taxname:279469	control	8.15	0.04	28.5	0.2	35.0	1.2	2146	125	414	46	26	8.00	10.68	409.79	411.04	1639.46	203.64	1853.78	3.29	4.93