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Suresh, Sneha; Welch, Megan J; Munday, Philip L; Ravasi, Timothy; Schunter, Celia (2024): Seawater carbonate chemistry and intergenerational acclimation to environmental change in Acanthochromis polyacanthus [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.973879

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Published: 2024-12-03 • DOI registered: 2025-01-01

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Abstract:
Here using a multi-tissue approach we determine how variation in parental behavioural tolerance and exposure to elevated CO2 influences the developmental and intergenerational molecular responses of their offspring in the coral reef fish Acanthochromis polyacanthus to future ocean acidification (OA) conditions.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from the PANGAEA dataset (see Source). In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-12-03.
Keyword(s):
Acanthochromis polyacanthus; Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Gene expression (incl. proteomics); Laboratory experiment; Nekton; Pelagos; Single species; South Pacific; Tropical
Related to:
Suresh, Sneha; Welch, Megan J; Munday, Philip L; Ravasi, Timothy; Schunter, Celia (2024): Cross-talk between tissues is critical for intergenerational acclimation to environmental change in Acanthochromis polyacanthus. Communications Biology, 7(1), 1531, https://doi.org/10.1038/s42003-024-07241-y
Source:
Welch, Megan J; Munday, Philip L (2017): Seawater carbonate chemistry and olfactory behaviour of coral fish Acanthochromis polyacanthus [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.900086
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024
Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Further details:
PRJNA311159 - SRA - NCBI [dataset]. National Center for Biotechnology Information, https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA311159 (Brain RNA-Seq raw sequences)
PRJNA989422 - SRA - NCBI [dataset]. National Center for Biotechnology Information, https://www.ncbi.nlm.nih.gov/sra/?term=PRJNA989422 (Gills and liver RNA-Seq raw sequences)
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Latitude: -18.640100 * Longitude: 146.492200
Event(s):
Great_Barrier_Reef_fish * Latitude: -18.640100 * Longitude: 146.492200
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeSchunter, Celia
2Species, unique identificationSpecies UIDSchunter, Celia
3Species, unique identification (URI)Species UID (URI)Schunter, Celia
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Schunter, Celia
5TreatmentTreatSchunter, Celia
6pH, NBS scalepH NBSSchunter, Celia
7pH, standard deviationpH std dev±Schunter, Celia
8Temperature, waterTemp°CSchunter, Celia
9Temperature, water, standard deviationTemp std dev±Schunter, Celia
10SalinitySalSchunter, Celia
11Salinity, standard deviationSal std dev±Schunter, Celia
12Alkalinity, totalATµmol/kgSchunter, Celia
13Alkalinity, total, standard deviationAT std dev±Schunter, Celia
14Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmSchunter, Celia
15Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Schunter, Celia
16Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
17pH, total scalepHTYang, YanCalculated using seacarb after Nisumaa et al. (2010)
18Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
19Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
20Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
21Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
22Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
23Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
24Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
25Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
46 data points

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