Citation:

PANGAEA.973814 (DOI registration in progress)

Name: Seawater carbonate chemistry and nitrogen isotopic composition of marine diazotrophic cyanobacteria
Published: 2024
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Bacteria; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Crocosphaera watsonii; Cyanobacteria; Growth/Morphology; Laboratory experiment; Laboratory strains; Not applicable; Other metabolic rates; Pelagos; Phytoplankton; Single species; Trichodesmium erythraeum

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Abstract:

Here we examine the effects of CO2 concentrations on the biomass δ15N signatures of the diazotrophs Trichodesmium erythraeum and Crocosphaera watsonii, which utilize Mo‐Fe nitrogenase (the most common form of the enzyme).

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-29.

Keyword(s):

Bacteria; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Crocosphaera watsonii; Cyanobacteria; Growth/Morphology; Laboratory experiment; Laboratory strains; Not applicable; Other metabolic rates; Pelagos; Phytoplankton; Single species; Trichodesmium erythraeum

Related to:

Wen, Zuozhu; Jiang, Ruotong; He, Tianli; Browning, Thomas J; Hong, Haizheng; Kao, Shuh-Ji; Yang, Jin-Yu Terence; Shi, Dalin (2024): Effects of CO 2 on the Nitrogen Isotopic Composition of Marine Diazotrophic Cyanobacteria. Geophysical Research Letters, 51(19), e2024GL110599, https://doi.org/10.1029/2024GL110599

Source:

Shi, Dalin; Wen, Zuozhu (2024): Effects of CO2 on diazotroph biomass δ15N [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.25709310.V2

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Wen, Zuozhu
2	Species	Species		Wen, Zuozhu
3	Treatment: carbon dioxide, partial pressure	T:pCO2	ppmv	Wen, Zuozhu
4	Replicate	Repl		Wen, Zuozhu
5	Growth rate	µ	1/day	Wen, Zuozhu
6	Nitrogen fixation rate per chlorophyll a	N2 fix/Chl	nmol/µg/h	Wen, Zuozhu
7	Nitrogen fixation rate, per cell	N2 fix/cell	fmol/#/h	Wen, Zuozhu
8	δ15N	δ15N	‰	Wen, Zuozhu
9	Nitrogenase reductase protein abundance	NifH prot abund	pmol/µg	Wen, Zuozhu		per protein
10	Nitrogenase efficiency	Nitrogenase eff	mol/mol/min	Wen, Zuozhu		per NifH
11	Salinity	Sal		Wen, Zuozhu
12	Temperature, water	Temp	°C	Wen, Zuozhu
13	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Wen, Zuozhu
14	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Wen, Zuozhu
15	pH, total scale	pHT		Wen, Zuozhu		total scale
16	pH, standard deviation	pH std dev	±	Wen, Zuozhu		total scale
17	Carbon, inorganic, dissolved	DIC	µmol/kg	Wen, Zuozhu
18	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Wen, Zuozhu
19	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
20	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
21	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
22	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
23	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
24	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
25	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
26	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
27	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
28	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
29	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
30	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
31	Alkalinity, total, standard deviation	AT std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
32	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
33	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
34	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
35	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

1020 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species	3 T:pCO2 [ppmv]	4 Repl	5 µ [1/day]	6 N2 fix/Chl [nmol/µg/h]	7 N2 fix/cell [fmol/#/h]	8 δ15N [‰]	9 NifH prot abund [pmol/µg] (per protein)	10 Nitrogenase eff [mol/mol/min] (per NifH)	11 Sal	12 Temp [°C]	13 pCO2water_SST_wet [µatm]	14 pCO2 std dev [±]	15 pHT (total scale)	16 pH std dev [±] (total scale)	17 DIC [µmol/kg]	18 DIC std dev [±]	19 CSC flag (Calculated using seacarb afte...)	20 CO2 [µmol/kg] (Calculated using seacarb afte...)	21 CO2 std dev [±] (Calculated using seacarb afte...)	22 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	23 fCO2 std dev [±] (Calculated using seacarb afte...)	24 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	25 pCO2 std dev [±] (Calculated using seacarb afte...)	26 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	27 [HCO3]- std dev [±] (Calculated using seacarb afte...)	28 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	29 [CO3]2- std dev [±] (Calculated using seacarb afte...)	30 AT [µmol/kg] (Calculated using seacarb afte...)	31 AT std dev [±] (Calculated using seacarb afte...)	32 Omega Arg (Calculated using seacarb afte...)	33 Omega Arg std dev [±] (Calculated using seacarb afte...)	34 Omega Cal (Calculated using seacarb afte...)	35 Omega Cal std dev [±] (Calculated using seacarb afte...)
laboratory	Trichodesmium erythraeum	180	1	0.484	9.34		-2.46	0.53	34.883	34.00	27.00	174	12	8.33	0.02	1891	19	9	4.85	0.28	178.42	10.53	178.97	10.56	1517.35	22.75	368.81	17.52	2415.35	31.49	5.95	0.39	8.99	0.59
laboratory	Trichodesmium erythraeum	180	2	0.474	9.06		-2.11	0.41	43.406	34.00	27.00	174	12	8.33	0.02	1891	19	9	4.85	0.28	178.42	10.53	178.97	10.56	1517.35	22.75	368.81	17.52	2415.35	31.49	5.95	0.39	8.99	0.59
laboratory	Trichodesmium erythraeum	180	3	0.494	8.94		-1.76	0.39	45.846	34.00	27.00	174	12	8.33	0.02	1891	19	9	4.85	0.28	178.42	10.53	178.97	10.56	1517.35	22.75	368.81	17.52	2415.35	31.49	5.95	0.39	8.99	0.59
laboratory	Trichodesmium erythraeum	280	1	0.502	10.06		-1.74	0.31	63.283	34.00	27.00	262	30	8.18	0.04	1889	16	9	7.24	0.78	266.66	28.58	267.49	28.67	1605.49	26.35	276.26	23.41	2283.64	37.15	4.46	0.43	6.73	0.65
laboratory	Trichodesmium erythraeum	280	2	0.487	10.11		-1.50	0.32	62.667	34.00	27.00	262	30	8.18	0.04	1889	16	9	7.24	0.78	266.66	28.58	267.49	28.67	1605.49	26.35	276.26	23.41	2283.64	37.15	4.46	0.43	6.73	0.65
laboratory	Trichodesmium erythraeum	280	3	0.534	9.71		-1.49	0.41	46.775	34.00	27.00	262	30	8.18	0.04	1889	16	9	7.24	0.78	266.66	28.58	267.49	28.67	1605.49	26.35	276.26	23.41	2283.64	37.15	4.46	0.43	6.73	0.65
laboratory	Trichodesmium erythraeum	380	1	0.516	10.70		-1.02	0.31	68.477	34.00	27.00	373	11	8.03	0.02	1899	11	9	10.72	0.58	394.91	21.41	396.14	21.48	1683.23	14.05	205.05	10.64	2189.63	18.73	3.31	0.23	5.00	0.35
laboratory	Trichodesmium erythraeum	380	2	0.552	10.25		-1.25	0.29	68.870	34.00	27.00	373	11	8.03	0.02	1899	11	9	10.72	0.58	394.91	21.41	396.14	21.48	1683.23	14.05	205.05	10.64	2189.63	18.73	3.31	0.23	5.00	0.35
laboratory	Trichodesmium erythraeum	380	3	0.542	10.82		-0.98	0.41	52.142	34.00	27.00	373	11	8.03	0.02	1899	11	9	10.72	0.58	394.91	21.41	396.14	21.48	1683.23	14.05	205.05	10.64	2189.63	18.73	3.31	0.23	5.00	0.35
laboratory	Trichodesmium erythraeum	1000	1	0.454	8.76		-3.02	0.69	25.043	34.00	27.00	956	22	7.65	0.04	1873	7	9	26.85	2.60	988.79	95.79	991.88	96.09	1756.93	8.98	89.22	8.48	1980.92	16.34	1.44	0.15	2.17	0.23
laboratory	Trichodesmium erythraeum	1000	2	0.471	8.63		-2.92	0.53	32.164	34.00	27.00	956	22	7.65	0.04	1873	7	9	26.85	2.60	988.79	95.79	991.88	96.09	1756.93	8.98	89.22	8.48	1980.92	16.34	1.44	0.15	2.17	0.23
laboratory	Trichodesmium erythraeum	1000	3	0.489	9.27		-2.57	0.73	25.269	34.00	27.00	956	22	7.65	0.04	1873	7	9	26.85	2.60	988.79	95.79	991.88	96.09	1756.93	8.98	89.22	8.48	1980.92	16.34	1.44	0.15	2.17	0.23
laboratory	Trichodesmium erythraeum	1400	1	0.437	7.50		-3.09	0.69	21.551	34.00	27.00	1355	21	7.53	0.05	1869	18	9	35.57	4.22	1309.79	155.65	1313.88	156.13	1765.42	17.52	68.01	8.05	1936.81	24.22	1.10	0.14	1.66	0.21
laboratory	Trichodesmium erythraeum	1400	2	0.462	7.63		-3.02	0.55	27.448	34.00	27.00	1355	21	7.53	0.05	1869	18	9	35.57	4.22	1309.79	155.65	1313.88	156.13	1765.42	17.52	68.01	8.05	1936.81	24.22	1.10	0.14	1.66	0.21
laboratory	Trichodesmium erythraeum	1400	3	0.444	8.02		-3.19	0.90	17.730	34.00	27.00	1355	21	7.53	0.05	1869	18	9	35.57	4.22	1309.79	155.65	1313.88	156.13	1765.42	17.52	68.01	8.05	1936.81	24.22	1.10	0.14	1.66	0.21
laboratory	Crocosphaera watsonii	180	1	0.470		1.01	-2.22	0.98	15.919	34.00	27.00	157	13	8.37	0.03	1884	8	9	4.32	0.37	159.16	13.64	159.65	13.69	1484.14	24.67	395.54	24.25	2445.73	33.30	6.38	0.49	9.64	0.74
laboratory	Crocosphaera watsonii	180	2	0.477		1.11	-2.29	0.67	25.631	34.00	27.00	157	13	8.37	0.03	1884	8	9	4.32	0.37	159.16	13.64	159.65	13.69	1484.14	24.67	395.54	24.25	2445.73	33.30	6.38	0.49	9.64	0.74
laboratory	Crocosphaera watsonii	180	3	0.503		1.12	-1.98	0.70	24.885	34.00	27.00	157	13	8.37	0.03	1884	8	9	4.32	0.37	159.16	13.64	159.65	13.69	1484.14	24.67	395.54	24.25	2445.73	33.30	6.38	0.49	9.64	0.74
laboratory	Crocosphaera watsonii	280	1	0.494		1.14	-1.63	0.51	34.779	34.00	27.00	234	12	8.16	0.01	1890	5	9	7.64	0.24	281.18	9.03	282.06	9.06	1616.69	10.28	265.67	9.52	2269.42	12.68	4.29	0.25	6.47	0.38
laboratory	Crocosphaera watsonii	280	2	0.499		1.09	-1.87	0.72	23.437	34.00	27.00	234	12	8.16	0.01	1890	5	9	7.64	0.24	281.18	9.03	282.06	9.06	1616.69	10.28	265.67	9.52	2269.42	12.68	4.29	0.25	6.47	0.38
laboratory	Crocosphaera watsonii	280	3	0.504		1.15	-1.68	0.56	31.359	34.00	27.00	234	12	8.16	0.01	1890	5	9	7.64	0.24	281.18	9.03	282.06	9.06	1616.69	10.28	265.67	9.52	2269.42	12.68	4.29	0.25	6.47	0.38
laboratory	Crocosphaera watsonii	380	1	0.535		1.26	-1.20	0.39	49.895	34.00	27.00	374	6	8.06	0.01	1892	7	9	9.90	0.31	364.51	11.52	365.65	11.55	1664.79	9.96	217.31	8.04	2201.13	12.42	3.51	0.21	5.30	0.31
laboratory	Crocosphaera watsonii	380	2	0.523		1.24	-0.85	0.42	45.458	34.00	27.00	374	6	8.06	0.01	1892	7	9	9.90	0.31	364.51	11.52	365.65	11.55	1664.79	9.96	217.31	8.04	2201.13	12.42	3.51	0.21	5.30	0.31
laboratory	Crocosphaera watsonii	380	3	0.537		1.34	-0.71	0.59	34.921	34.00	27.00	374	6	8.06	0.01	1892	7	9	9.90	0.31	364.51	11.52	365.65	11.55	1664.79	9.96	217.31	8.04	2201.13	12.42	3.51	0.21	5.30	0.31
laboratory	Crocosphaera watsonii	1000	1	0.469		0.81	-2.62	1.24	10.094	34.00	27.00	969	22	7.68	0.01	1872	3	9	24.99	0.74	920.05	27.42	922.92	27.50	1751.70	4.45	95.32	3.77	1990.81	5.95	1.54	0.09	2.32	0.14
laboratory	Crocosphaera watsonii	1000	2	0.449		0.82	-2.43	0.87	14.554	34.00	27.00	969	22	7.68	0.01	1872	3	9	24.99	0.74	920.05	27.42	922.92	27.50	1751.70	4.45	95.32	3.77	1990.81	5.95	1.54	0.09	2.32	0.14
laboratory	Crocosphaera watsonii	1000	3	0.427		0.81	-2.63	1.43	8.746	34.00	27.00	969	22	7.68	0.01	1872	3	9	24.99	0.74	920.05	27.42	922.92	27.50	1751.70	4.45	95.32	3.77	1990.81	5.95	1.54	0.09	2.32	0.14
laboratory	Crocosphaera watsonii	1400	1	0.406		0.46	-3.70	1.25	5.640	34.00	27.00	1313	16	7.51	0.02	1867	10	9	37.24	1.86	1371.06	68.85	1375.35	69.07	1764.84	9.78	64.93	3.67	1928.58	12.12	1.05	0.08	1.58	0.12
laboratory	Crocosphaera watsonii	1400	2	0.398		0.51	-3.50	0.94	8.371	34.00	27.00	1313	16	7.51	0.02	1867	10	9	37.24	1.86	1371.06	68.85	1375.35	69.07	1764.84	9.78	64.93	3.67	1928.58	12.12	1.05	0.08	1.58	0.12
laboratory	Crocosphaera watsonii	1400	3	0.417		0.45	-3.59	1.53	4.527	34.00	27.00	1313	16	7.51	0.02	1867	10	9	37.24	1.86	1371.06	68.85	1375.35	69.07	1764.84	9.78	64.93	3.67	1928.58	12.12	1.05	0.08	1.58	0.12