Citation:

PANGAEA.973299

Name: Seawater carbonate chemistry and the impacts of expected near-future climate change on coral reef communities
Published: 2024-11-06
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Benthos; Calcification/Dissolution; Coast and continental shelf; Community composition and diversity; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Laboratory experiment; Montipora capitata; Montipora flabellata; Montipora patula; Mortality/Survival; North Pacific; Pocillopora damicornis; Pocillopora meandrina; Porites compressa; Porites evermanni; Porites lobata; Rocky-shore community; Temperature; Tropical

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Abstract:

Here, we present a two-year experimental study examining the responses of entire mesocosm coral reef communities to warming (+2 °C), acidification (−0.2 pH units), and combined future ocean (+2 °C, −0.2 pH) treatments.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Figshare (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-11-05.

Keyword(s):

Benthos; Calcification/Dissolution; Coast and continental shelf; Community composition and diversity; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Laboratory experiment; Montipora capitata; Montipora flabellata; Montipora patula; Mortality/Survival; North Pacific; Pocillopora damicornis; Pocillopora meandrina; Porites compressa; Porites evermanni; Porites lobata; Rocky-shore community; Temperature; Tropical

Related to:

Jury, Christopher P; Bahr, Keisha D; Cros, Annick; Dobson, Kerri L; Freel, Evan B; Graham, Andrew T; McLachlan, Rowan H; Nelson, Craig E; Price, James T; de Souza, Mariana Rocha; Shizuru, Leah; Smith, Celia M; Sparagon, Wesley J; Squair, Cheryl A; Timmers, Molly A; Vicente, Jan; Webb, Maryann K; Yamase, Nicole H; Grottoli, Andréa G; Toonen, Robert J (2024): Experimental coral reef communities transform yet persist under mitigated future ocean warming and acidification. Proceedings of the National Academy of Sciences of the United States of America, 121(45), e2407112121, https://doi.org/10.1073/pnas.2407112121

Source:

Jury, Christopher P; Bahr, Keisha D; Cros, Annick; Dobson, Kerri L; Freel, Evan B; Graham, Andrew T; McLachlan, Rowan H; Nelson, Craig E; Price, James T; de Souza, Mariana Rocha; Shizuru, Leah; Smith, Celia M; Sparagon, Wesley J; Squair, Cheryl A; Timmers, Molly A; Vicente, Jan; Webb, Maryann K; Grottoli, Andréa G; Yamase, Nicole H (2024): Data and code associtated with, "Experimental coral reef communities transform yet persist under mitigated future ocean warming and acidification" [dataset]. figshare, https://doi.org/10.6084/M9.FIGSHARE.27115516

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Yang, Yan; Brockmann, Patrick; Galdino, Carolina; Schindler, Uwe; Gazeau, Frédéric (2024): An update of data compilation on the biological response to ocean acidification and overview of the OA-ICC data portal. Earth System Science Data, 16(8), 3771-3780, https://doi.org/10.5194/essd-16-3771-2024

Yang, Yan; Hansson, L; Gattuso, Jean-Pierre (2016): Data compilation on the biological response to ocean acidification: an update. Earth System Science Data, 8(1), 79-87, https://doi.org/10.5194/essd-8-79-2016

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Jury, Christopher P
2	Date	Date		Jury, Christopher P
3	Time in days	Time	days	Jury, Christopher P		past start
4	Treatment	Treat		Jury, Christopher P
5	Survival	Survival	%	Jury, Christopher P
6	Survival rate, standard deviation	Survival rate std dev	±	Jury, Christopher P
7	Species, unique identification	Species UID		Jury, Christopher P
8	Species, unique identification (URI)	Species UID (URI)		Jury, Christopher P
9	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Jury, Christopher P
10	Surface area	SA	cm²	Jury, Christopher P
11	Surface area, standard deviation	SA std dev	±	Jury, Christopher P
12	Coverage	Cov	%	Jury, Christopher P
13	Coverage, standard deviation	Cov std dev	±	Jury, Christopher P
14	Unit	Unit		Jury, Christopher P		mean cover
15	Coverage	Cov	%	Jury, Christopher P		Anenome
16	Coverage	Cov	%	Jury, Christopher P		Bivalve
17	Coverage	Cov	%	Jury, Christopher P		Bivalve (empty)
18	Coverage	Cov	%	Jury, Christopher P		Hardworm tube
19	Coverage	Cov	%	Jury, Christopher P		Sponge
20	Coverage	Cov	%	Jury, Christopher P		Sol Tunicate
21	Coverage	Cov	%	Jury, Christopher P		Vermetidae
22	Coverage	Cov	%	Jury, Christopher P		Sediment
23	Coverage	Cov	%	Jury, Christopher P		Turf Algae
24	Coverage	Cov	%	Jury, Christopher P		Mobile Fauna
25	Coverage	Cov	%	Jury, Christopher P		No recruitment (empty)
26	Coverage	Cov	%	Jury, Christopher P		Unavailable
27	Coverage	Cov	%	Jury, Christopher P		CCA
28	Coverage	Cov	%	Jury, Christopher P		Green encrusting algae
29	Coverage	Cov	%	Jury, Christopher P		Green upright algae
30	Group	Group		Jury, Christopher P
31	Species richness	S		Jury, Christopher P
32	Species richness	S		Jury, Christopher P		Proportional
33	Identification	ID		Jury, Christopher P		Tank
34	Identification	ID		Jury, Christopher P		Header
35	Calcification rate	Calc rate	g/m²/a	Jury, Christopher P		Coral communities
36	Calcification rate	Calc rate	g/m²/a	Jury, Christopher P		Rubble-associated communities
37	Calcification rate	Calc rate	g/m²/a	Jury, Christopher P		Entire mesocosm communities
38	Calcification rate	Calc rate	g/m²/a	Jury, Christopher P		Coral communities
39	Calcification rate, standard deviation	Calc rate std dev	±	Jury, Christopher P		Coral communities
40	Calcification rate	Calc rate	g/m²/a	Jury, Christopher P		Entire mesocosm communities
41	Calcification rate, standard deviation	Calc rate std dev	±	Jury, Christopher P		Entire mesocosm communities
42	Calcification rate	Calc rate	g/m²/a	Jury, Christopher P		Rubble-associated communities
43	Calcification rate, standard deviation	Calc rate std dev	±	Jury, Christopher P		Rubble-associated communities
44	Salinity	Sal		Jury, Christopher P
45	Salinity, standard deviation	Sal std dev	±	Jury, Christopher P
46	Temperature, water	Temp	°C	Jury, Christopher P
47	Temperature, water, standard deviation	Temp std dev	±	Jury, Christopher P
48	pH, total scale	pHT		Jury, Christopher P		total scale
49	pH, standard deviation	pH std dev	±	Jury, Christopher P		total scale
50	Alkalinity, total	AT	µmol/kg	Jury, Christopher P
51	Alkalinity, total, standard deviation	AT std dev	±	Jury, Christopher P
52	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Jury, Christopher P
53	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Jury, Christopher P
54	Aragonite saturation state	Omega Arg		Jury, Christopher P
55	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Jury, Christopher P
56	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
57	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
58	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
59	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
61	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
62	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
63	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
64	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
65	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
66	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
67	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
68	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
69	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
70	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
71	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
72	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

18436 data points

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