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Murray, Christopher S; Gregg, J L; Mackenzie, A H; Jayasekera, H T; Hall, S; Klinger, Terrie; Hershberger, P K (2024): Seawater carbonate chemistry and bioenergetics and disease susceptibility in Pacific herring Clupea pallasii [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.971301

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Published: 2024-07-19 • DOI registered: 2024-08-17

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Abstract:
Pacific herring Clupea pallasii were reared from hatch under 3 CO2 partial pressure (pCO2) treatments (ambient, ~650 μatm; intermediate, ~1500 μatm; high, ~3000 μatm) through metamorphosis (98 d) to evaluate the effects of ocean acidification on bioenergetics and susceptibility to an endemic viral disease.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were downloaded from Zenodo (see Source) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-07-19.
Keyword(s):
Animalia; Behaviour; Chordata; Clupea pallasii; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mortality/Survival; Nekton; North Pacific; Other; Other studied parameter or process; Pelagos; Single species; Temperate
Related to:
Murray, Christopher S; Gregg, J L; Mackenzie, A H; Jayasekera, H T; Hall, S; Klinger, Terrie; Hershberger, P K (2024): Effects of elevated pCO2 on bioenergetics and disease susceptibility in Pacific herring Clupea pallasii. Marine Ecology Progress Series, 738, 225-242, https://doi.org/10.3354/meps14607
Source:
Murray, Christopher S (2024): Experimental data from long-term elevated pCO2 exposure in Pacific herring. Datasets include measurements of enviromental treatment conditions, growth and developmental traits, and mortality data from a disease challenge [dataset]. Zenodo, https://doi.org/10.5281/ZENODO.11473923
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Project(s):
Ocean Acidification International Coordination Centre (OA-ICC)
Coverage:
Date/Time Start: 2021-06-29T10:45:00 * Date/Time End: 2021-07-14T09:57:00
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeMurray, Christopher S
2Species, unique identificationSpecies UIDMurray, Christopher S
3Species, unique identification (URI)Species UID (URI)Murray, Christopher S
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Murray, Christopher S
5ReplicateReplMurray, Christopher S
6TreatmentTreatMurray, Christopher S
7IdentificationIDMurray, Christopher SVial
8AgeAgedaysMurray, Christopher Sfish age days post-hatch
9IdentificationIDMurray, Christopher SFish
10Length, standardI stdmmMurray, Christopher Slarvae
11Feeding behaviourFeed behavMurray, Christopher S0 negative for feeding, 1 positive for feeding
12Yolk sac areaYolk sac amm2Murray, Christopher S
13IdentificationIDMurray, Christopher S
14Dry massDry mmgMurray, Christopher S
15Temperature, sampleT sample°CMurray, Christopher Sdry
16Time in hoursTimehMurray, Christopher Sdry
17LarvaeLarvae#Murray, Christopher Snumber of starting larvae per tank
18Number of subsamplesSubsamples#Murray, Christopher Sremoved per replicate during rearing trial for growth, swimming, disease challenge, and other samples
19Numbern#Murray, Christopher Sobserved accidental deaths
20Numbern#Murray, Christopher Sfinal count of fish remaining in tank
21Numbern#Murray, Christopher Sunaccounted for mortalities during the rearing trial
22Proportion of survivalSurvivalMurray, Christopher S
23DATE/TIMEDate/TimeMurray, Christopher SGeocode
24pH, NBS scalepH NBSMurray, Christopher SNBS scale,at the start of the trial
25Temperature, waterTemp°CMurray, Christopher Sat start of trial
26pH, NBS scalepH NBSMurray, Christopher SNBS scale,at the end of the trial
27Temperature, waterTemp°CMurray, Christopher Sat end of trial
28SalinitySalMurray, Christopher Smean of the trail
29pHpHMurray, Christopher Smean of the trail
30Length, standardI stdmmMurray, Christopher Stested fish
31Wet massWet mgMurray, Christopher S
32Condition factorCFMurray, Christopher S
33Speed, swimmingSp swimcm/sMurray, Christopher Smaximum speed achieved by the tested fish
34VelocityVcm/sMurray, Christopher Sincrement
35Time in secondsTimesMurray, Christopher Sspent swimming at final velocity
36Time in secondsTimesMurray, Christopher Sincrement time for velocity increase
37Speed, swimmingSp swimcm/sMurray, Christopher Scalculated maximum
38Date/time startDate/time startMurray, Christopher S
39Sampling dateSampling dateMurray, Christopher S
40Time in daysTimedaysMurray, Christopher Spost VHSV exposure
41TreatmentTreatMurray, Christopher Svirus
42ReplicateReplMurray, Christopher Spathogen challenge tank
43StatusStatusMurray, Christopher S1 indicates survivor sampled at end of trial and 2 indicates mortality collected during trial
44Numbern#Murray, Christopher Sviral plaques detected in VHSV exposed survivors and mortalities
45Temperature, waterTemp°CMurray, Christopher S
46SalinitySalMurray, Christopher S
47Carbon, inorganic, dissolvedDICµmol/kgMurray, Christopher S
48pH, total scalepHTMurray, Christopher Stotal scale
49Alkalinity, totalATµmol/kgMurray, Christopher SCalculated with seacarb package in R
50Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmMurray, Christopher SCalculated with seacarb package in R
51Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmMurray, Christopher SCalculated with seacarb package in R
52Bicarbonate ion[HCO3]-µmol/kgMurray, Christopher SCalculated with seacarb package in R
53Carbonate ion[CO3]2-µmol/kgMurray, Christopher SCalculated with seacarb package in R
54Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
59Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Size:
122811 data points

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