Citation:

PANGAEA.971247

Name: Seawater carbonate chemistry and survival, feed intake, growth, molting, tissue biochemical constituents, minerals, chitin, and alkaline phosphatase in mud crab Scylla serrata instars
Published: 2024-07-15
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Arthropoda; Behaviour; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Laboratory strains; Mortality/Survival; Not applicable; Other metabolic rates; Scylla serrata; Single species

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Abstract:

The present investigation evaluated the effect of seawater acidification on the edible marine mud crab Scylla serrata instars. The experimental setup was designed using a multi-cell cage based system assembled with 20 pre holed PVC pipes containing 20 individual crabs to avoid cannibalism. The crab instars were exposed to CO2 driven acidified seawater at pH 7.8 (IPCC forecast pH at the end of the 21st century), 7.6, 7.4, 7.2, and 7.0 for 60 days. The crabs reared in seawater without acidification at pH 8.2 served as control.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-07-15.

Keyword(s):

Animalia; Arthropoda; Behaviour; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Laboratory strains; Mortality/Survival; Not applicable; Other metabolic rates; Scylla serrata; Single species

Related to:

Thangal, Said Hamid; Muralisankar, T; Anandhan, Krishnan; Gayathri, Velusamy; Yogeshwaran, Arumugam (2022): Effect of CO2 driven ocean acidification on the mud crab Scylla serrata instars. Environmental Pollution, 312, 119995, https://doi.org/10.1016/j.envpol.2022.119995

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Muralisankar, T
2	Species, unique identification	Species UID		Muralisankar, T
3	Species, unique identification (URI)	Species UID (URI)		Muralisankar, T
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Muralisankar, T
5	Treatment: pH	T:pH		Muralisankar, T
6	Survival	Survival	%	Muralisankar, T
7	Survival rate, standard deviation	Survival rate std dev	±	Muralisankar, T
8	Length	l	cm	Muralisankar, T		Initial
9	Length, standard deviation	l std dev	±	Muralisankar, T		Initial
10	Length	l	cm	Muralisankar, T		Final
11	Length, standard deviation	l std dev	±	Muralisankar, T		Final
12	Length	l	cm	Muralisankar, T		Gain
13	Length, standard deviation	l std dev	±	Muralisankar, T		Gain
14	Mass	Mass	g	Muralisankar, T		Initial
15	Mass, standard deviation	Mass std dev	±	Muralisankar, T		Initial
16	Mass	Mass	g	Muralisankar, T		Final
17	Mass, standard deviation	Mass std dev	±	Muralisankar, T		Final
18	Mass	Mass	g	Muralisankar, T		Gain
19	Mass, standard deviation	Mass std dev	±	Muralisankar, T		Gain
20	Molt per day	Molt/day	#/day	Muralisankar, T
21	Molt per day, standard deviation	Molt/day std dev	±	Muralisankar, T
22	Feed intake	Feed intake	g/day	Muralisankar, T
23	Feed intake, standard deviation	Feed intake std dev	±	Muralisankar, T
24	Specific growth rate	SGR	%/day	Muralisankar, T
25	Specific growth rate, standard deviation	SGR std dev	±	Muralisankar, T
26	Feed conversion ratio	FCR		Muralisankar, T
27	Feed conversion ratio, standard deviation	FCR std dev	±	Muralisankar, T
28	Proteins, in tissue	PTR	mg/g	Muralisankar, T
29	Proteins, standard deviation	Protein std dev	±	Muralisankar, T
30	Carbohydrates, total	CHO tot	µg/g	Muralisankar, T
31	Carbohydrates, total, standard deviation	CHO tot std dev	±	Muralisankar, T
32	Amino acids	AA	mg/g	Muralisankar, T
33	Amino acid, standard deviation	AA std dev	±	Muralisankar, T
34	Lipids	Lipids	μg/g	Muralisankar, T
35	Lipids, standard deviation	Lipids std dev	±	Muralisankar, T
36	Moisture	Moisture	%	Muralisankar, T
37	Moisture, standard deviation	Moisture std dev	±	Muralisankar, T
38	Ash	Ash	%	Muralisankar, T
39	Ash, standard deviation	Ash std dev	±	Muralisankar, T
40	Chitin	Chitin	g/kg	Muralisankar, T
41	Chitin, standard deviation	Chitin std dev	±	Muralisankar, T
42	Sodium	Na	mg/kg	Muralisankar, T
43	Sodium, standard deviation	Na std dev	±	Muralisankar, T
44	Potassium	K	mg/kg	Muralisankar, T
45	Potassium, standard deviation	K std dev	±	Muralisankar, T
46	Calcium	Ca	mg/kg	Muralisankar, T
47	Calcium, standard deviation	Ca std dev	±	Muralisankar, T
48	Superoxide dismutase activity, unit per protein mass	SOD/prot	U/mg	Muralisankar, T
49	Superoxide dismutase activity, standard deviation	SOD std dev	±	Muralisankar, T
50	Catalase activity, per protein mass	CAT/prot	µmol/min/mg	Muralisankar, T
51	Catalase activity, standard deviation	CAT std dev	±	Muralisankar, T
52	Lipid peroxidation activity, per protein	LPO/prot	nmol/mg	Muralisankar, T
53	Lipid peroxidation, standard deviation	LPO std dev	±	Muralisankar, T
54	Glutamic oxaloacetate transaminase activity	GOT act	U/ml	Muralisankar, T
55	Glutamic oxaloacetate transaminase activity, standard deviation	GOT act std dev	±	Muralisankar, T
56	Glutamic pyruvate transaminase activity	GPT act	U/ml	Muralisankar, T
57	Glutamic pyruvate transaminase activity, standard deviation	GPT act std dev	±	Muralisankar, T
58	Alkaline phosphatase	ALKP	relative units	Muralisankar, T		KA units
59	Alkaline phosphatase activity, standard deviation	ALKP A std dev	±	Muralisankar, T		KA units
60	pH	pH		Muralisankar, T	Potentiometric	total scale
61	pH, standard deviation	pH std dev	±	Muralisankar, T	Potentiometric	total scale
62	Salinity	Sal		Muralisankar, T
63	Salinity, standard deviation	Sal std dev	±	Muralisankar, T
64	Temperature, water	Temp	°C	Muralisankar, T
65	Temperature, water, standard deviation	Temp std dev	±	Muralisankar, T
66	Alkalinity, total	AT	µmol/kg	Muralisankar, T
67	Alkalinity, total, standard deviation	AT std dev	±	Muralisankar, T
68	Oxygen, dissolved	DO	mg/l	Muralisankar, T
69	Oxygen, dissolved, standard deviation	DO std dev	±	Muralisankar, T
70	Carbon, inorganic, dissolved	DIC	µmol/kg	Muralisankar, T	Calculated using CO2calc
71	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Muralisankar, T	Calculated using CO2calc
72	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Muralisankar, T	Calculated using CO2calc
73	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Muralisankar, T	Calculated using CO2calc
74	Bicarbonate ion	[HCO3]-	µmol/kg	Muralisankar, T	Calculated using CO2calc
75	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Muralisankar, T	Calculated using CO2calc
76	Carbonate ion	[CO3]2-	µmol/kg	Muralisankar, T	Calculated using CO2calc
77	Carbonate ion, standard deviation	[CO3]2- std dev	±	Muralisankar, T	Calculated using CO2calc
78	Calcite saturation state	Omega Cal		Muralisankar, T	Calculated using CO2calc
79	Calcite saturation state, standard deviation	Omega Cal std dev	±	Muralisankar, T	Calculated using CO2calc
80	Aragonite saturation state	Omega Arg		Muralisankar, T	Calculated using CO2calc
81	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Muralisankar, T	Calculated using CO2calc
82	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
83	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
84	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
85	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
86	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
87	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
88	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
89	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
90	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
91	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
92	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
93	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
94	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
95	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
96	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
97	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
98	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

576 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species UID	3 Species UID (URI)	4 Species UID (Semantic URI)	5 T:pH	6 Survival [%]	7 Survival rate std dev [±]	8 l [cm] (Initial)	9 l std dev [±] (Initial)	10 l [cm] (Final)	11 l std dev [±] (Final)	12 l [cm] (Gain)	13 l std dev [±] (Gain)	14 Mass [g] (Initial)	15 Mass std dev [±] (Initial)	16 Mass [g] (Final)	17 Mass std dev [±] (Final)	18 Mass [g] (Gain)	19 Mass std dev [±] (Gain)	20 Molt/day [#/day]	21 Molt/day std dev [±]	22 Feed intake [g/day]	23 Feed intake std dev [±]	24 SGR [%/day]	25 SGR std dev [±]	26 FCR	27 FCR std dev [±]	28 PTR [mg/g]	29 Protein std dev [±]	30 CHO tot [µg/g]	31 CHO tot std dev [±]	32 AA [mg/g]	33 AA std dev [±]	34 Lipids [μg/g]	35 Lipids std dev [±]	36 Moisture [%]	37 Moisture std dev [±]	38 Ash [%]	39 Ash std dev [±]	40 Chitin [g/kg]	41 Chitin std dev [±]	42 Na [mg/kg]	43 Na std dev [±]	44 K [mg/kg]	45 K std dev [±]	46 Ca [mg/kg]	47 Ca std dev [±]	48 SOD/prot [U/mg]	49 SOD std dev [±]	50 CAT/prot [µmol/min/mg]	51 CAT std dev [±]	52 LPO/prot [nmol/mg]	53 LPO std dev [±]	54 GOT act [U/ml]	55 GOT act std dev [±]	56 GPT act [U/ml]	57 GPT act std dev [±]	58 ALKP [relative units] (KA units)	59 ALKP A std dev [±] (KA units)	60 pH (total scale, Potentiometric)	61 pH std dev [±] (total scale, Potentiometric)	62 Sal	63 Sal std dev [±]	64 Temp [°C]	65 Temp std dev [±]	66 AT [µmol/kg]	67 AT std dev [±]	68 DO [mg/l]	69 DO std dev [±]	70 DIC [µmol/kg] (Calculated using CO2calc)	71 DIC std dev [±] (Calculated using CO2calc)	72 pCO2water_SST_wet [µatm] (Calculated using CO2calc)	73 pCO2 std dev [±] (Calculated using CO2calc)	74 [HCO3]- [µmol/kg] (Calculated using CO2calc)	75 [HCO3]- std dev [±] (Calculated using CO2calc)	76 [CO3]2- [µmol/kg] (Calculated using CO2calc)	77 [CO3]2- std dev [±] (Calculated using CO2calc)	78 Omega Cal (Calculated using CO2calc)	79 Omega Cal std dev [±] (Calculated using CO2calc)	80 Omega Arg (Calculated using CO2calc)	81 Omega Arg std dev [±] (Calculated using CO2calc)	82 CSC flag (Calculated using seacarb afte...)	83 CO2 [µmol/kg] (Calculated using seacarb afte...)	84 CO2 std dev [±] (Calculated using seacarb afte...)	85 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	86 fCO2 std dev [±] (Calculated using seacarb afte...)	87 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	88 pCO2 std dev [±] (Calculated using seacarb afte...)	89 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	90 [HCO3]- std dev [±] (Calculated using seacarb afte...)	91 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	92 [CO3]2- std dev [±] (Calculated using seacarb afte...)	93 DIC [µmol/kg] (Calculated using seacarb afte...)	94 DIC std dev [±] (Calculated using seacarb afte...)	95 Omega Arg (Calculated using seacarb afte...)	96 Omega Arg std dev [±] (Calculated using seacarb afte...)	97 Omega Cal (Calculated using seacarb afte...)	98 Omega Cal std dev [±] (Calculated using seacarb afte...)
laboratory	Scylla serrata	marinespecies.org	urn:lsid:marinespecies.org:taxname:208814	8.2	100	0.0	0.60	0.05	3.0	0.3	2.4	0.4	0.1	0.01	4.0	1.3	4.0	1.3	1.5	1.4	0.2	0.10	2.7	0.10	0.04	0.01	228.01	6.81	85000	10000	204	14	24000	600	65	1.0	8.7	1.2	0.90	0.01	185	4.3	28.0	0.2	51.0	0.3	5.59	0.28	0.54	0.01	2.48	0.23	28.75	0.67	21.30	0.75	1.9500	0.0500	8.2	0.05	34	0.8	26	1.1	1861	38	6.5	0.10	1503	14	197	29	1266	45	231	32	5.6	0.7	3.70	0.5	8	5.65	0.89	202.97	31.26	203.61	31.36	1287.01	57.58	223.60	20.24	1516.25	45.82	3.59	0.37	5.44	0.56
laboratory	Scylla serrata	marinespecies.org	urn:lsid:marinespecies.org:taxname:208814	7.8	100	0.0	0.60	0.10	2.6	0.3	2.0	0.3	0.1	0.00	2.7	0.9	2.7	0.9	1.4	2.0	0.1	0.10	2.6	0.10	0.04	0.01	171.38	9.32	54000	6300	180	13	24000	600	67	1.5	3.7	1.2	0.90	0.01	168	0.2	25.0	0.2	31.0	0.3	7.97	0.31	0.73	0.02	4.03	0.22	30.71	0.92	26.82	1.59	1.2200	0.0300	7.8	0.05	34	0.7	26	1.1	1789	52	6.0	0.40	1632	20	588	64	1507	4	110	21	2.6	0.5	1.70	0.3	8	16.75	2.34	601.62	82.55	603.52	82.81	1518.70	53.99	105.04	11.76	1640.49	53.15	1.69	0.21	2.55	0.31
laboratory	Scylla serrata	marinespecies.org	urn:lsid:marinespecies.org:taxname:208814	7.6	93	2.9	0.60	0.02	2.4	0.1	1.8	0.1	0.1	0.01	2.0	0.2	2.2	0.2	1.3	1.5	0.1	0.10	2.5	0.04	0.04	0.02	156.22	14.80	43000	8000	167	10	24000	500	69	0.5	3.7	0.6	0.93	0.01	159	0.7	23.0	0.4	27.0	0.2	8.85	0.29	0.83	0.01	4.77	0.08	35.11	0.65	27.00	0.39	1.2100	0.0200	7.6	0.05	34	0.8	26	1.1	1756	50	5.5	0.20	1670	28	971	97	1571	18	73	13	1.7	0.3	1.00	0.2	8	27.58	3.69	990.96	130.21	994.09	130.62	1578.36	50.14	68.88	8.11	1674.82	51.25	1.11	0.14	1.68	0.21
laboratory	Scylla serrata	marinespecies.org	urn:lsid:marinespecies.org:taxname:208814	7.4	88	2.9	0.63	0.05	2.1	0.1	1.5	0.1	0.1	0.01	1.8	0.4	1.7	0.4	1.3	1.5	0.1	0.10	2.4	0.10	0.05	0.02	144.47	15.96	38400	2600	164	7	23000	1200	71	0.5	3.0	0.6	0.90	0.01	98	0.5	22.5	0.4	21.0	0.5	9.81	0.37	0.92	0.03	5.23	0.11	37.32	0.07	27.67	1.14	0.8900	0.2100	7.4	0.02	34	0.9	26	1.1	1756	50	5.4	0.15	1720	33	1522	108	1630	29	49	8	1.0	0.2	0.80	0.1	8	45.41	2.91	1631.64	97.69	1636.81	97.99	1639.74	47.94	45.15	3.25	1730.31	50.45	0.72	0.06	1.10	0.09
laboratory	Scylla serrata	marinespecies.org	urn:lsid:marinespecies.org:taxname:208814	7.2	75	5.0	0.63	0.11	2.0	0.1	1.3	0.2	0.1	0.01	1.2	0.3	1.2	0.3	1.2	1.5	0.1	0.10	2.2	0.10	0.06	0.03	114.47	8.10	35000	1100	149	17	22000	600	73	0.5	3.0	0.6	0.90	0.01	84	0.2	22.0	1.0	20.5	0.3	12.57	0.32	1.18	0.03	6.74	0.24	37.49	0.18	28.22	3.77	0.3100	0.0300	7.2	0.03	34	0.9	26	1.1	1756	50	5.2	0.10	1774	32	2480	227	1674	34	32	6	0.8	0.1	0.50	0.1	8	73.79	6.10	2650.93	211.41	2659.33	212.07	1680.93	48.70	29.20	2.58	1783.92	52.10	0.47	0.05	0.71	0.07
laboratory	Scylla serrata	marinespecies.org	urn:lsid:marinespecies.org:taxname:208814	7.0	70	5.0	0.64	0.06	1.8	0.2	1.2	0.3	0.1	0.01	1.0	0.3	1.0	0.3	1.2	1.4	0.1	0.04	2.1	0.20	0.07	0.03	101.88	4.09	33000	2600	130	27	21000	400	75	1.0	2.3	0.6	0.90	0.01	78	0.5	17.0	0.4	20.0	0.6	14.99	0.38	1.46	0.02	7.69	0.29	41.42	2.11	32.31	2.93	0.2200	0.0200	7.1	0.06	34	0.9	26	1.1	1756	50	4.9	0.10	1825	28	3731	421	1699	38	22	5	0.5	0.1	0.34	0.8	8	93.72	13.91	3367.05	494.76	3377.74	496.34	1695.90	49.40	23.40	3.41	1813.02	55.29	0.38	0.06	0.57	0.09