Citation:

PANGAEA.970016

Name: Seawater carbonate chemistry and gamete intraspecific differences and adaptability of sea urchin
Published: 2024-07-09
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Echinodermata; Laboratory experiment; Mediterranean Sea; Paracentrotus lividus; Reproduction; Single species; Temperate

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Abstract:

Egg physical characteristics, biochemical composition, and fatty acid profiles were assessed after two and six months of exposure, while sperm viability and velocity were analyzed after six months of exposure. Considering the documented intraspecific variability in response to ocean acidification, this study involved two populations of Paracentrotus lividus. One population was sampled from the highly variable lagoon of Venice (Site 1), while the other was obtained from a coastal area (Site 2) characterized by more stable environmental conditions and facing minimal anthropogenic stress.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-07-08.

Keyword(s):

Animalia; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Echinodermata; Laboratory experiment; Mediterranean Sea; Paracentrotus lividus; Reproduction; Single species; Temperate

Related to:

Asnicar, Davide; Locatello, Lisa; Zanovello, Laura; Minichino, Riccardo; Masiero, Luciano; Munari, M; Marin, Maria Gabriella (2024): How do sea urchins prepare offspring to face ocean acidification? Gamete intraspecific differences and adaptability. Frontiers in Marine Science, 11, 1379150, https://doi.org/10.3389/fmars.2024.1379150

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Median Latitude: 45.476500 * Median Longitude: 12.980950 * South-bound Latitude: 45.228000 * West-bound Longitude: 12.270000 * North-bound Latitude: 45.725000 * East-bound Longitude: 13.691900

Event(s):

Gulf_of_Trieste * Latitude: 45.725000 * Longitude: 13.691900 * Method/Device: Experiment (EXP) * Comment: Where the studied organisms were collected

Venice_Lagoon_OA * Latitude: 45.228000 * Longitude: 12.270000 * Method/Device: Experiment (EXP) * Comment: Where the studied organisms were collected

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Asnicar, Davide
2	Type of study	Study type		Asnicar, Davide
3	Species, unique identification	Species UID		Asnicar, Davide
4	Species, unique identification (URI)	Species UID (URI)		Asnicar, Davide
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Asnicar, Davide
6	Site	Site		Asnicar, Davide
7	Identification	ID		Asnicar, Davide		tank
8	Identification	ID		Asnicar, Davide		Adult
9	Treatment	Treat		Asnicar, Davide		Adult
10	pH	pH		Asnicar, Davide		Adult, total scale
11	Treatment	Treat		Asnicar, Davide		Gamete
12	pH	pH		Asnicar, Davide		Gamete, total scale
13	Time in minutes	Time	min	Asnicar, Davide		Sperm performance checked after 0 or 30 mins
14	Replicate	Repl		Asnicar, Davide
15	Number	n	#	Asnicar, Davide		Total
16	Number	n	#	Asnicar, Davide		Dead
17	Number	n	#	Asnicar, Davide		Alive
18	Viability	Viab	%	Asnicar, Davide		Sperm
19	Temperature, water	Temp	°C	Asnicar, Davide
20	Salinity	Sal		Asnicar, Davide
21	Comment	Comment		Asnicar, Davide
22	Average path velocity	VAP	µm/s	Asnicar, Davide
23	Straight line velocity	VSL	µm/s	Asnicar, Davide
24	Curvilinear velocity	VCL	µm/s	Asnicar, Davide
25	Replicate	Repl		Asnicar, Davide		2
26	Experiment duration	Exp duration	months	Asnicar, Davide		Adult Exposure
27	Eggs	Eggs	#	Asnicar, Davide
28	Eggs, standard error	Eggs std e	±	Asnicar, Davide
29	Eggs, diameter	Eggs diam	mm	Asnicar, Davide
30	Diameter, standard error	Ø std e	±	Asnicar, Davide		Egg
31	Mass	Mass	µg	Asnicar, Davide		Egg
32	Mass, standard error	Mass std e	±	Asnicar, Davide		Egg
33	Lipids per egg	Lipids/egg	ng/#	Asnicar, Davide		total
34	Lipids, standard error	Lipids std e	±	Asnicar, Davide		total, per egg
35	Total protein per egg	Prot tot/egg	ng/#	Asnicar, Davide
36	Proteins, standard error	Protein std e	±	Asnicar, Davide		total, per egg
37	Total carbohydrate per egg	CHO tot/egg	ng/#	Asnicar, Davide
38	Carbohydrates, standard error	CHO std e	±	Asnicar, Davide		total, per egg
39	Total energy per egg	E tot/egg	mJ/#	Asnicar, Davide
40	Total energy per egg, standard error	E tot/egg std e	±	Asnicar, Davide
41	pH	pH		Asnicar, Davide		total scale, adult
42	pH, standard deviation	pH std dev	±	Asnicar, Davide		total scale, adult
43	Temperature, water	Temp	°C	Asnicar, Davide		adult
44	Temperature, water, standard deviation	Temp std dev	±	Asnicar, Davide		adult
45	Salinity	Sal		Asnicar, Davide		adult
46	Salinity, standard deviation	Sal std dev	±	Asnicar, Davide		adult
47	Oxygen, gas	O2	ppmv	Asnicar, Davide		adult
48	Oxygen, standard deviation	O2 std dev	±	Asnicar, Davide		adult
49	Alkalinity, total	AT	µmol/kg	Asnicar, Davide		adult
50	Alkalinity, total, standard deviation	AT std dev	±	Asnicar, Davide		adult
51	Carbon, inorganic, dissolved	DIC	µmol/kg	Asnicar, Davide		adult
52	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Asnicar, Davide		adult
53	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Asnicar, Davide		adult
54	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Asnicar, Davide		adult
55	Calcite saturation state	Omega Cal		Asnicar, Davide		adult
56	Calcite saturation state, standard deviation	Omega Cal std dev	±	Asnicar, Davide		adult
57	Aragonite saturation state	Omega Arg		Asnicar, Davide		adult
58	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Asnicar, Davide		adult
59	pH	pH		Asnicar, Davide		total scale, gamete
60	pH, standard deviation	pH std dev	±	Asnicar, Davide		total scale, gamete
61	Alkalinity, total	AT	µmol/kg	Asnicar, Davide		gamete
62	Alkalinity, total, standard deviation	AT std dev	±	Asnicar, Davide		gamete
63	Carbon, inorganic, dissolved	DIC	µmol/kg	Asnicar, Davide		gamete
64	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Asnicar, Davide		gamete
65	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Asnicar, Davide		gamete
66	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Asnicar, Davide		gamete
67	Calcite saturation state	Omega Cal		Asnicar, Davide		gamete
68	Calcite saturation state, standard deviation	Omega Cal std dev	±	Asnicar, Davide		gamete
69	Aragonite saturation state	Omega Arg		Asnicar, Davide		gamete
70	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Asnicar, Davide		gamete
71	Temperature, water	Temp	°C	Asnicar, Davide		gamete
72	Temperature, water, standard deviation	Temp std dev	±	Asnicar, Davide		gamete
73	Salinity	Sal		Asnicar, Davide		gamete
74	Salinity, standard deviation	Sal std dev	±	Asnicar, Davide		gamete
75	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
76	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
77	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
78	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
79	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
80	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
81	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
82	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
83	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	adult
84	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
85	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
86	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
87	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
88	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
89	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
90	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete
91	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	gamete

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Size:

39532 data points

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