Titschack, Jürgen; Schmitt, Kira; Baum, Daniel; Büscher, Janina; Form, Armin; Timann, Christian; Lemke, Arne-Jörn: Directed edges of the colony skeleton graph from Lophelia pertusa colony sample POS455-A2W [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969464 (dataset in review), In: Titschack, Jürgen; Schmitt, Kira; Baum, Daniel; Büscher, Janina; Form, Armin; Tracey, Dianne M; Mills, Sadie; Wienberg, Claudia; Timann, Christian; Lemke, Arne-Jörn: CT-based calices segmentation (in DICOM format) of cold-water coral colony samples and spreadsheet containing the directed edges of the colony skeleton graph [dataset bundled publication]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969578 (dataset in review)
Abstract:
Lophelia pertusa sample POS455-A2W originates from Leksa reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (white colourmorph). The dataset contains a spreadsheet containing the (directed) edges of the colony skeleton graph related to the calices segmentation of dataset in https://doi.pangaea.de/10.1594/PANGAEA.969465. Each label in POS455-A2W_calices dataset represents a vertex in this graph. The edges are given by their start label Node ID #1 and the label of their target Node ID #2.
Keyword(s):
Related to:
Schmitt, Kira; Titschack, Jürgen; Baum, Daniel (preprint): CoDA: Interactive Segmentation and Morphological Analysis of Dendroid Structures Exemplified on Stony Cold-Water Corals. arXiv, https://doi.org/10.48550/ARXIV.2406.18236
Further details:
Titschack, Jürgen; Schmitt, Kira; Baum, Daniel; Büscher, Janina; Form, Armin; Timann, Christian; Lemke, Arne-Jörn: CT raw data, polyp-cavity segmentation and calices segmentation (all DICOM format) of Lophelia pertusa colony POS455-A2W [dataset]. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.969465
Funding:
Federal Ministry of Education and Research (BMBF), grant/award no. 03F0655A: Biological Impacts of Ocean Acidification / BIOACID II
German Research Foundation (DFG), grant/award no. Ba5042/6-1; Ti706/6-1; project 490665120: CTcoral – CyberTaxonomische Klassifizierung und morphologische Charakterisierung von Kaltwasserkorallen
Coverage:
Latitude: 63.607600 * Longitude: 9.379300
Minimum Elevation: -157.0 m * Maximum Elevation: -157.0 m
Event(s):
POS455-A2W (A2W) * Latitude: 63.607600 * Longitude: 9.379300 * Elevation: -157.0 m * Campaign: POS455 (BIOACID) * Basis: Poseidon * Comment: Lophelia pertusa sample A2W originates from Leksa reef, off Norway, where it was taken with the submersible Jago during Poseidon cruise POS455 (position: 63.6076° N, 9.3793° E, 157 m water depth, white colourmorp).
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Edge, start | Edge start | Titschack, Jürgen | Coral Dendroid structure Analyzer (CoDA) | Node ID #1 | |
| 2 | Edge, target | Edge target | Titschack, Jürgen | Coral Dendroid structure Analyzer (CoDA) | Node ID #2 |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0) (License comes into effect after moratorium ends)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
218 data points