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Taylor, Jennifer; Astbury, Mia; Childers, Elizabeth C; Contractor, Kanisha; Lin, Xinyu; Mencarelli, Jenna; Prohoff, Alisa J; Tapia, Kendra (2024): Seawater carbonate chemistry and shrimp armor and escape kinematics [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.968649

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Abstract:
Pandalid shrimp use morphological and behavioral defenses against their numerous fish and invertebrate predators. Their rapid tail-flip escape and rigid exoskeleton armor may be sensitive to changes in ocean temperature and carbon chemistry in ways that alter their efficacy and impact mortality. Here we tested the hypothesis that ocean warming and acidification conditions affect the anti-predator defenses of Pandalus gurneyi. To test this hypothesis, we exposed shrimp to a combination of pH (8.0, 7.7, 7.5) and temperature (13°C, 17°C) treatments and assessed their tail-flip escape and exoskeleton armor after short-term (2 weeks) and medium-term (3 months) exposure.
This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-05-22.
Keyword(s):
Animalia; Arthropoda; Behaviour; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Coast and continental shelf; Development; Growth/Morphology; Laboratory experiment; North Pacific; Other studied parameter or process; Pandalus gurneyi; Single species; Temperate; Temperature
Related to:
Taylor, Jennifer; Astbury, Mia; Childers, Elizabeth C; Contractor, Kanisha; Lin, Xinyu; Mencarelli, Jenna; Prohoff, Alisa J; Tapia, Kendra (2024): Time-dependent Changes in Shrimp Armor And Escape Kinematics Under Ocean Acidification And Warming. Integrative and Comparative Biology, icae035, https://doi.org/10.1093/icb/icae035
References:
Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Latitude: 36.605358 * Longitude: -121.889382
Event(s):
Wharf_No2 * Latitude: 36.605358 * Longitude: -121.889382 * Method/Device: Experiment (EXP)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Type of studyStudy typeTaylor, Jennifer
Species, unique identificationSpecies UIDTaylor, Jennifer
Species, unique identification (URI)Species UID (URI)Taylor, Jennifer
Species, unique identification (Semantic URI)Species UID (Semantic URI)Taylor, Jennifer
Time point, descriptiveTime pointTaylor, Jennifer
Treatment: pHT:pHTaylor, Jennifer
Treatment: temperatureT:temp°CTaylor, Jennifer
VelocityVcm/sTaylor, Jenniferpeak, maximum
Velocity, standard deviationVel std dev±Taylor, Jenniferpeak, maximum
10 VelocityVcm/sTaylor, Jenniferpeak, mean
11 Velocity, standard deviationVel std dev±Taylor, Jenniferpeak, mean
12 AccelerationAccm/s2Taylor, Jennifermaximum
13 Acceleration, standard deviationAcc std dev±Taylor, Jennifermaximum
14 AccelerationAccm/s2Taylor, Jennifermean
15 Acceleration, standard deviationAcc std dev±Taylor, Jennifermean
16 VelocityVcm/sTaylor, Jenniferaverage, maximum
17 Velocity, standard deviationVel std dev±Taylor, Jenniferaverage, maximum
18 VelocityVcm/sTaylor, Jenniferaverage, mean
19 Velocity, standard deviationVel std dev±Taylor, Jenniferaverage, mean
20 DistanceDistancemTaylor, Jennifermaximum
21 Distance, standard deviationDistance std dev±Taylor, Jennifermaximum
22 DistanceDistancemTaylor, Jennifermean
23 Distance, standard deviationDistance std dev±Taylor, Jennifermean
24 DurationDurationsTaylor, Jenniferflexion, maximum
25 Duration, standard deviationDuration std dev±Taylor, Jenniferflexion, maximum
26 DurationDurationsTaylor, Jenniferflexion, mean
27 Duration, standard deviationDuration std dev±Taylor, Jenniferflexion, mean
28 CalciumCaµmol/mgTaylor, Jennifer
29 Calcium, standard deviationCa std dev±Taylor, Jennifer
30 MagnesiumMgµmol/mgTaylor, Jennifer
31 Magnesium, standard deviationMg std dev±Taylor, Jennifer
32 HardnessHardnessGPaTaylor, Jennifer
33 Hardness, standard deviationHardness std dev±Taylor, Jennifer
34 StiffnessStiffnessGPaTaylor, Jennifer
35 Stiffness, standard deviationStiff std dev±Taylor, Jennifer
36 RatioRatioTaylor, Jenniferrostrum length/carapace length
37 Ratio, standard deviationRatio std dev±Taylor, Jenniferrostrum length/carapace length
38 Rostrum radius of curvatureROCmmTaylor, Jennifer
39 Rostrum radius of curvature, standard deviationROC std dev±Taylor, Jennifer
40 StiffnessStiffN/mmTaylor, Jennifer
41 Stiffness, standard deviationStiff std dev±Taylor, Jennifer
42 StrengthStrengthNTaylor, Jennifer
43 Strength, standard deviationStrength std dev±Taylor, Jennifer
44 IndividualsInd#Taylor, Jennifermolted
45 SalinitySalTaylor, Jennifer
46 pHpHTaylor, Jennifertotal scale, daily
47 pH, standard deviationpH std dev±Taylor, Jennifertotal scale, daily
48 Temperature, waterTemp°CTaylor, Jennifer
49 Temperature, water, standard deviationTemp std dev±Taylor, Jennifer
50 pHpHTaylor, Jennifertotal scale
51 pH, standard deviationpH std dev±Taylor, Jennifertotal scale
52 Alkalinity, totalATµmol/kgTaylor, Jennifer
53 Alkalinity, total, standard deviationAT std dev±Taylor, Jennifer
54 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmTaylor, JenniferCalculated using CO2SYS
55 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Taylor, JenniferCalculated using CO2SYS
56 Bicarbonate ion[HCO3]-µmol/kgTaylor, JenniferCalculated using CO2SYS
57 Bicarbonate ion, standard deviation[HCO3]- std dev±Taylor, JenniferCalculated using CO2SYS
58 Calcite saturation stateOmega CalTaylor, JenniferCalculated using CO2SYS
59 Calcite saturation state, standard deviationOmega Cal std dev±Taylor, JenniferCalculated using CO2SYS
60 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
62 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
63 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
64 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
65 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
66 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
67 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
68 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1478 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Study type

Species UID

Species UID (URI)

Species UID (Semantic URI)

Time point

T:pH

T:temp [°C]

V [cm/s]
(peak, maximum)

Vel std dev [±]
(peak, maximum)
10 
V [cm/s]
(peak, mean)
11 
Vel std dev [±]
(peak, mean)
12 
Acc [m/s2]
(maximum)
13 
Acc std dev [±]
(maximum)
14 
Acc [m/s2]
(mean)
15 
Acc std dev [±]
(mean)
16 
V [cm/s]
(average, maximum)
17 
Vel std dev [±]
(average, maximum)
18 
V [cm/s]
(average, mean)
19 
Vel std dev [±]
(average, mean)
20 
Distance [m]
(maximum)
21 
Distance std dev [±]
(maximum)
22 
Distance [m]
(mean)
23 
Distance std dev [±]
(mean)
24 
Duration [s]
(flexion, maximum)
25 
Duration std dev [±]
(flexion, maximum)
26 
Duration [s]
(flexion, mean)
27 
Duration std dev [±]
(flexion, mean)
28 
Ca [µmol/mg]
29 
Ca std dev [±]
30 
Mg [µmol/mg]
31 
Mg std dev [±]
32 
Hardness [GPa]
33 
Hardness std dev [±]
34 
Stiffness [GPa]
35 
Stiff std dev [±]
36 
Ratio
(rostrum length/carapace length)
37 
Ratio std dev [±]
(rostrum length/carapace length)
38 
ROC [mm]
39 
ROC std dev [±]
40 
Stiff [N/mm]
41 
Stiff std dev [±]
42 
Strength [N]
43 
Strength std dev [±]
44 
Ind [#]
(molted)
45 
Sal
46 
pH
(total scale, daily)
47 
pH std dev [±]
(total scale, daily)
48 
Temp [°C]
49 
Temp std dev [±]
50 
pH
(total scale)
51 
pH std dev [±]
(total scale)
52 
AT [µmol/kg]
53 
AT std dev [±]
54 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
55 
pCO2 std dev [±]
(Calculated using CO2SYS)
56 
[HCO3]- [µmol/kg]
(Calculated using CO2SYS)
57 
[HCO3]- std dev [±]
(Calculated using CO2SYS)
58 
Omega Cal
(Calculated using CO2SYS)
59 
Omega Cal std dev [±]
(Calculated using CO2SYS)
60 
CSC flag
(Calculated using seacarb afte...)
61 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
62 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
63 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
64 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
65 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
66 
DIC [µmol/kg]
(Calculated using seacarb afte...)
67 
Omega Arg
(Calculated using seacarb afte...)
68 
Omega Cal
(Calculated using seacarb afte...)
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Pre-exp8.013111180.760.181213094.015.00.640.160.430.090.070.0200.050.010.040.010.030.003.910.340.330.030.740.306.084.031.360.270.0700.03337.970.0413.30.67.990.00222734590191822.970.01818.11453.61455.291918.01124.462060.571.923.00
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks8.01393240.700.0812211107.09.00.370.070.270.050.080.0200.060.010.040.000.030.003.740.560.340.040.850.487.029.43337.970.0413.30.67.990.00222734590191822.970.01818.11453.61455.291918.01124.462060.571.923.00
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months8.013124300.770.1715623133.013.00.520.180.350.080.080.0300.050.020.040.010.040.014.510.550.410.040.670.509.537.071.770.190.0200.010.020.0030.180.06337.970.0413.30.67.990.00222734590191822.970.01818.11453.61455.291918.01124.462060.571.923.00
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Pre-exp8.017337.960.0517.40.97.970.00222824782188413.330.02816.98481.32483.011889.56137.032043.562.133.32
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks8.01790160.630.1413712128.08.00.380.110.280.100.060.0200.040.000.030.010.030.004.430.540.370.041.510.2218.505.05337.960.0517.40.97.970.00222824782188413.330.02816.98481.32483.011889.56137.032043.562.133.32
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months8.017105230.800.1916019139.017.00.510.160.360.110.080.0300.050.020.040.010.040.004.000.380.480.040.590.295.684.391.600.110.0200.010.180.0400.180.04337.960.0517.40.97.970.00222824782188413.330.02816.98481.32483.011889.56137.032043.562.133.32
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Pre-exp7.713337.710.0313.10.77.700.00222919551205901.620.00838.10948.60952.132060.0268.032166.151.051.64
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.71399220.720.1012010107.02.00.410.090.290.040.080.0160.050.010.040.000.030.003.600.580.270.040.820.369.726.31337.710.0313.10.77.700.00222919551205901.620.00838.10948.60952.132060.0268.032166.151.051.64
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.713132210.870.1615312136.012.00.690.220.400.070.100.0300.060.020.050.020.040.014.640.420.430.090.480.446.365.321.610.170.0200.010.030.0100.220.06337.710.0313.10.77.700.00222919551205901.620.00838.10948.60952.132060.0268.032166.151.051.64
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Pre-exp7.717337.700.0417.30.87.690.012230098317203431.900.03834.99989.05992.532039.0977.312151.391.201.87
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.717100230.780.131041197.37.40.460.200.300.070.080.0300.060.010.030.010.030.004.290.290.370.031.510.2421.607.57337.700.0417.30.87.690.012230098317203431.900.03834.99989.05992.532039.0977.312151.391.201.87
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.717106180.780.1216021137.019.00.500.150.350.080.070.0200.050.010.040.010.030.013.850.880.480.100.670.496.726.721.640.110.0100.010.020.0100.150.06337.700.0417.30.87.690.012230098317203431.900.03834.99989.05992.532039.0977.312151.391.201.87
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Pre-exp7.513337.550.0413.00.77.530.002231014295211001.160.00857.981438.971444.332114.2047.022219.200.721.13
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.513100340.750.2117340134.027.00.440.190.310.080.070.0200.050.010.040.010.030.014.140.390.310.021.450.2222.337.24337.550.0413.00.77.530.002231014295211001.160.00857.981438.971444.332114.2047.022219.200.721.13
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.513116320.780.1416921138.014.00.540.180.360.070.080.0300.050.010.040.010.030.014.230.160.390.040.630.454.655.071.750.200.0160.010.030.0100.190.07337.550.0413.00.77.530.002231014295211001.160.00857.981438.971444.332114.2047.022219.200.721.13
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Pre-exp7.517337.540.0517.10.97.520.002229314994209321.320.01853.471502.611507.922097.2353.352204.050.831.29
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.517123190.770.181465125.07.00.570.220.330.220.080.0200.050.010.030.000.030.003.950.390.350.061.650.3222.9010.78337.540.0517.10.97.520.002229314994209321.320.01853.471502.611507.922097.2353.352204.050.831.29
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.517118350.830.1616038137.014.00.600.180.420.130.060.0200.040.010.040.010.030.004.120.330.480.030.650.456.106.251.650.390.0230.010.030.0200.250.09337.540.0517.10.97.520.002229314994209321.320.01853.471502.611507.922097.2353.352204.050.831.29
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Ramp-up8.0133337.970.0413.30.67.990.00222734590191822.970.01818.11453.61455.291918.01124.462060.571.923.00
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks8.0133337.970.0413.30.67.990.00222734590191822.970.01818.11453.61455.291918.01124.462060.571.923.00
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months8.0133337.970.0413.30.67.990.00222734590191822.970.01818.11453.61455.291918.01124.462060.571.923.00
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Ramp-up8.0173337.960.0517.40.97.970.00222824782188413.330.02816.98481.32483.011889.56137.032043.562.133.32
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks8.0172337.960.0517.40.97.970.00222824782188413.330.02816.98481.32483.011889.56137.032043.562.133.32
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months8.0173337.960.0517.40.97.970.00222824782188413.330.02816.98481.32483.011889.56137.032043.562.133.32
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Ramp-up7.7135337.710.0313.10.77.700.00222919551205901.620.00838.10948.60952.132060.0268.032166.151.051.64
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.7132337.710.0313.10.77.700.00222919551205901.620.00838.10948.60952.132060.0268.032166.151.051.64
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.7135337.710.0313.10.77.700.00222919551205901.620.00838.10948.60952.132060.0268.032166.151.051.64
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Ramp-up7.7173337.700.0417.30.87.690.012230098317203431.900.03834.99989.05992.532039.0977.312151.391.201.87
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.7172337.700.0417.30.87.690.012230098317203431.900.03834.99989.05992.532039.0977.312151.391.201.87
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.7172337.700.0417.30.87.690.012230098317203431.900.03834.99989.05992.532039.0977.312151.391.201.87
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Ramp-up7.51313337.550.0413.00.77.530.002231014295211001.160.00857.981438.971444.332114.2047.022219.200.721.13
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.51314337.550.0413.00.77.530.002231014295211001.160.00857.981438.971444.332114.2047.022219.200.721.13
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.51314337.550.0413.00.77.530.002231014295211001.160.00857.981438.971444.332114.2047.022219.200.721.13
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:515466Ramp-up7.51714337.540.0517.10.97.520.002229314994209321.320.01853.471502.611507.922097.2353.352204.050.831.29
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154662 weeks7.51713337.540.0517.10.97.520.002229314994209321.320.01853.471502.611507.922097.2353.352204.050.831.29
laboratoryPandalus gurneyimarinespecies.orgurn:lsid:marinespecies.org:taxname:5154663 months7.51713337.540.0517.10.97.520.002229314994209321.320.01853.471502.611507.922097.2353.352204.050.831.29