Citation:

PANGAEA.968465

Name: Seawater carbonate chemistry and physiology and growth of the Atlantic Surfclam (Spisula solidissima)
Published: 2024-05-16
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; North Atlantic; Other studied parameter or process; Single species; Spisula solidissima; Temperate; Temperature

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Abstract:

This study examines the physiological response of the Atlantic surfclam (Spisula solidissima) to ocean acidification in warm summer temperatures. Working with ambient seawater, this experiment manipulated pH conditions while maintaining natural diel fluctuations and seasonal shifts in temperature. One-year-old surfclams were exposed to one of three pH conditions (ambient (control): 7.8 ± 0.07, medium: 7.51 ± 0.10, or low: 7.20 ± 0.10) in flow-through conditions for six weeks, and feeding and digestive physiology was measured after one day, two weeks, and six weeks.

This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were extracted from tables in the related paper (see Related to) by the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-05-16.

Keyword(s):

Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Mollusca; North Atlantic; Other studied parameter or process; Single species; Spisula solidissima; Temperate; Temperature

Related to:

Steeves, Laura; Honecker, Molly; Meseck, Shannon; Munroe, Daphne (2024): Effects of Ocean Acidification and Summer Thermal Stress on the Physiology and Growth of the Atlantic Surfclam (Spisula solidissima). Journal of Marine Science and Engineering, 12(4), 673, https://doi.org/10.3390/jmse12040673

References:

Nisumaa, Anne-Marin; Pesant, Stephane; Bellerby, Richard G J; Delille, Bruno; Middelburg, Jack J; Orr, James C; Riebesell, Ulf; Tyrrell, Toby; Wolf-Gladrow, Dieter A; Gattuso, Jean-Pierre (2010): EPOCA/EUR-OCEANS data compilation on the biological and biogeochemical responses to ocean acidification. Earth System Science Data, 2(2), 167-175, https://doi.org/10.5194/essd-2-167-2010

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Steeves, Laura
2	Species, unique identification	Species UID		Steeves, Laura
3	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Steeves, Laura
4	Species, unique identification (URI)	Species UID (URI)		Steeves, Laura
5	Treatment	Treat		Steeves, Laura
6	Day of experiment	DOE	day	Steeves, Laura		sampling time
7	Temperature, water	Temp	°C	Steeves, Laura		average on the sampling day
8	Tissue, dry mass	Tissue dm	g	Steeves, Laura
9	Dry mass, standard deviation	Dry m std dev	±	Steeves, Laura		Tissue
10	Shell length	Shell l	mm	Steeves, Laura
11	Shell length, standard deviation	Shell l std dev	±	Steeves, Laura
12	Shell thickness	Shell thick	mm	Steeves, Laura
13	Shell thickness, standard deviation	Shell thick std dev	±	Steeves, Laura
14	Shell strength per shell thickness	Shell str/shell thick	N/mm	Steeves, Laura
15	Shell strength per shell thickness, standard deviation	Shell str/shell thick std dev	±	Steeves, Laura
16	Condition index	CI		Steeves, Laura
17	Condition index, standard deviation	CI std dev	±	Steeves, Laura
18	Clearance rate	CR	l/h	Steeves, Laura
19	Clearance rate, standard deviation	CR std dev	±	Steeves, Laura
20	Filtration rate	FR	mg/h	Steeves, Laura
21	Filtration rate, standard deviation	FR std dev	±	Steeves, Laura
22	Rejection rate	Rejec rate	mg/h	Steeves, Laura
23	Rejection rate, standard deviation	Rejec rate std dev	±	Steeves, Laura
24	Ingestion rate, organic weight	IR org w	µg/h	Steeves, Laura
25	Ingestion rate, standard deviation	IR std dev	±	Steeves, Laura		Organic
26	Absorption rate	Absorp	mg/h	Steeves, Laura
27	Absorption rate, standard deviation	Absorp std dev	±	Steeves, Laura
28	Egestion rate	Eges rate	mg/h	Steeves, Laura
29	Egestion rate, standard deviation	Eges rate std dev	±	Steeves, Laura
30	Temperature, water	Temp	°C	Steeves, Laura
31	Temperature, water, standard deviation	Temp std dev	±	Steeves, Laura
32	Oxygen	O2	mg/l	Steeves, Laura
33	Oxygen, standard deviation	O2 std dev	±	Steeves, Laura
34	Salinity	Sal		Steeves, Laura
35	Salinity, standard deviation	Sal std dev	±	Steeves, Laura
36	pH	pH		Steeves, Laura		in situ, seawater scale
37	pH, standard deviation	pH std dev	±	Steeves, Laura		in situ, seawater scale
38	Carbon, inorganic, dissolved	DIC	µmol/kg	Steeves, Laura
39	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Steeves, Laura
40	Alkalinity, total	AT	µmol/kg	Steeves, Laura
41	Alkalinity, total, standard deviation	AT std dev	±	Steeves, Laura
42	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Steeves, Laura
43	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Steeves, Laura
44	Aragonite saturation state	Omega Arg		Steeves, Laura
45	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Steeves, Laura
46	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
48	pH, standard deviation	pH std dev	±	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
49	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
51	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
53	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
55	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
56	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
57	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
58	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
59	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
61	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
62	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

540 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Study type	2 Species UID	3 Species UID (Semantic URI)	4 Species UID (URI)	5 Treat	6 DOE [day] (sampling time)	7 Temp [°C] (average on the sampling day)	8 Tissue dm [g]	9 Dry m std dev [±] (Tissue)	10 Shell l [mm]	11 Shell l std dev [±]	12 Shell thick [mm]	13 Shell thick std dev [±]	14 Shell str/shell thick [N/mm]	15 Shell str/shell thick std dev [±]	16 CI	17 CI std dev [±]	18 CR [l/h]	19 CR std dev [±]	20 FR [mg/h]	21 FR std dev [±]	22 Rejec rate [mg/h]	23 Rejec rate std dev [±]	24 IR org w [µg/h]	25 IR std dev [±] (Organic)	26 Absorp [mg/h]	27 Absorp std dev [±]	28 Eges rate [mg/h]	29 Eges rate std dev [±]	30 Temp [°C]	31 Temp std dev [±]	32 O2 [mg/l]	33 O2 std dev [±]	34 Sal	35 Sal std dev [±]	36 pH (in situ, seawater scale)	37 pH std dev [±] (in situ, seawater scale)	38 DIC [µmol/kg]	39 DIC std dev [±]	40 AT [µmol/kg]	41 AT std dev [±]	42 pCO2water_SST_wet [µatm]	43 pCO2 std dev [±]	44 Omega Arg	45 Omega Arg std dev [±]	46 CSC flag (Calculated using seacarb afte...)	47 pH (total scale, Calculated using...)	48 pH std dev [±] (total scale, Calculated using...)	49 CO2 [µmol/kg] (Calculated using seacarb afte...)	50 CO2 std dev [±] (Calculated using seacarb afte...)	51 fCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	52 fCO2 std dev [±] (Calculated using seacarb afte...)	53 pCO2water_SST_wet [µatm] (Calculated using seacarb afte...)	54 pCO2 std dev [±] (Calculated using seacarb afte...)	55 [HCO3]- [µmol/kg] (Calculated using seacarb afte...)	56 [HCO3]- std dev [±] (Calculated using seacarb afte...)	57 [CO3]2- [µmol/kg] (Calculated using seacarb afte...)	58 [CO3]2- std dev [±] (Calculated using seacarb afte...)	59 Omega Arg (Calculated using seacarb afte...)	60 Omega Arg std dev [±] (Calculated using seacarb afte...)	61 Omega Cal (Calculated using seacarb afte...)	62 Omega Cal std dev [±] (Calculated using seacarb afte...)
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Ambient pH	1	18.9	0.25	0.04	31.03	1.33	0.70	0.06	76.70	19.96	0.12	0.01	1.18	0.24	54.80	11.14	34.94	7.94	16240	3520	13.42	3.53	17.22	3.35	22.13	2.06	6.92	0.43	30.66	1.29	7.81	0.07	1992.68	70.31	2080.79	58.15	1002.10	288.35	1.30	0.27	15	7.69	0.28	29.88	20.69	954.60	664.95	957.76	667.15	1882.26	92.60	80.54	48.62	1.29	0.78	2.00	1.21
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Medium pH	1	18.9	0.34	0.06	34.13	1.51	0.81	0.12	86.61	26.69	0.13	0.02	0.85	0.64	53.08	39.89	40.07	31.26	9130	7190	8.00	6.56	10.34	7.45	22.07	2.09	6.92	0.45	30.64	1.28	7.51	0.11	2097.79	66.61	2084.18	54.96	2274.74	369.15	0.62	0.09	15	7.34	0.30	69.83	48.88	2227.26	1566.72	2234.67	1571.92	1989.51	49.38	38.45	25.85	0.62	0.42	0.95	0.64
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Low pH	1	18.9	0.28	0.28	32.16	1.87	0.79	0.10	77.84	20.21	0.12	0.01	0.59	0.12	32.42	6.65	19.22	4.63	10990	2400	9.67	2.27	12.40	2.49	21.99	2.10	6.99	0.43	30.63	1.27	7.20	0.10	2178.28	98.04	2085.90	53.64	4293.57	1289.67	0.37	0.11	15	7.10	0.31	125.00	88.97	3977.86	2842.51	3991.13	2852.00	2030.93	47.06	22.35	15.68	0.36	0.25	0.55	0.39
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Ambient pH	14	20.3	0.31	0.06	32.17	2.54	0.78	0.09	80.05	24.67	0.13	0.01	1.13	0.36	62.25	19.75	44.97	14.77	13240	5870	11.93	5.56	16.30	6.33	22.13	2.06	6.92	0.43	30.66	1.29	7.81	0.07	1992.68	70.31	2080.79	58.15	1002.10	288.35	1.30	0.27	15	7.69	0.28	29.88	20.69	954.60	664.95	957.76	667.15	1882.26	92.60	80.54	48.62	1.29	0.78	2.00	1.21
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Medium pH	14	20.3	0.43	0.08	36.56	1.07	0.80	0.09	83.02	14.24	0.14	0.01	0.71	0.17	42.59	10.40	30.97	8.32	8280	2840	7.04	2.53	10.72	3.22	22.07	2.09	6.92	0.45	30.64	1.28	7.51	0.11	2097.79	66.61	2084.18	54.96	2274.74	369.15	0.62	0.09	15	7.34	0.30	69.83	48.88	2227.26	1566.72	2234.67	1571.92	1989.51	49.38	38.45	25.85	0.62	0.42	0.95	0.64
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Low pH	14	20.3	0.39	0.06	35.53	1.58	0.79	0.12	61.16	19.23	0.13	0.02	0.45	0.26	21.14	11.96	14.99	8.56	4760	3390	4.02	2.65	5.18	3.39	21.99	2.10	6.99	0.43	30.63	1.27	7.20	0.10	2178.28	98.04	2085.90	53.64	4293.57	1289.67	0.37	0.11	15	7.10	0.31	125.00	88.97	3977.86	2842.51	3991.13	2852.00	2030.93	47.06	22.35	15.68	0.36	0.25	0.55	0.39
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Ambient pH	42	23.5	0.50	0.04	39.86	1.56	0.79	0.05	94.61	23.03	0.11	0.00	0.25	0.12	10.05	4.55	5.20	2.86	4290	2010	3.80	1.88	4.54	1.83	22.13	2.06	6.92	0.43	30.66	1.29	7.81	0.07	1992.68	70.31	2080.79	58.15	1002.10	288.35	1.30	0.27	15	7.69	0.28	29.88	20.69	954.60	664.95	957.76	667.15	1882.26	92.60	80.54	48.62	1.29	0.78	2.00	1.21
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Medium pH	42	23.5	0.66	0.17	40.69	2.61	0.88	0.06	113.37	34.14	0.14	0.02	0.32	0.17	10.59	5.54	7.90	4.86	1850	1380	1.58	1.35	2.61	1.23	22.07	2.09	6.92	0.45	30.64	1.28	7.51	0.11	2097.79	66.61	2084.18	54.96	2274.74	369.15	0.62	0.09	15	7.34	0.30	69.83	48.88	2227.26	1566.72	2234.67	1571.92	1989.51	49.38	38.45	25.85	0.62	0.42	0.95	0.64
laboratory	Spisula solidissima	urn:lsid:marinespecies.org:taxname:156996	marinespecies.org	Low pH	42	23.5	0.53	0.09	39.19	1.89	0.80	0.09	90.96	27.21	0.12	0.01	0.64	0.28	11.00	4.73	6.07	3.45	4320	2470	3.91	2.31	3.65	2.05	21.99	2.10	6.99	0.43	30.63	1.27	7.20	0.10	2178.28	98.04	2085.90	53.64	4293.57	1289.67	0.37	0.11	15	7.10	0.31	125.00	88.97	3977.86	2842.51	3991.13	2852.00	2030.93	47.06	22.35	15.68	0.36	0.25	0.55	0.39