Citation:

PANGAEA.967220

Name: Seawater carbonate chemistry and taxonomic diversity of benthic communities under persistent natural CO2 disturbances
Published: 2024-04-15
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Benthos; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Field observation; North Atlantic; Rocky-shore community; Temperate

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Published: 2024-04-15 • DOI registered: 2024-05-14

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Abstract:

Here, we explored the effects of ocean acidification on marine benthic communities using DNA metabarcoding to assess the diversity of algae and metazoans. Specifically, we examined the natural pH gradient generated by the Fuencaliente CO2 vent system, located near La Palma Island (Canary Islands).

Keyword(s):

Benthos; CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Field observation; North Atlantic; Rocky-shore community; Temperate

Related to:

González-Delgado, Sara; Wangensteen, Owen S; Sangil, Carlos; Hernández, Celso Agustín; Alfonso, Beatriz; Soto, Ana Z; Pérez-Portela, Rocío; Mariani, Stefano; Hernández, José Carlos (2023): High taxonomic diversity and miniaturization in benthic communities under persistent natural CO 2 disturbances. Proceedings of the Royal Society B-Biological Sciences, 290(1995), 20222417, https://doi.org/10.1098/rspb.2022.2417

Source:

GitHub - Sgonzalezdelgado/MetabarcodingCO2vent: Alpha diversity and relative abundance analysis with Metabarcoding data in R

Related code / software:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Median Latitude: 28.456128 * Median Longitude: -17.845987 * South-bound Latitude: 28.455950 * West-bound Longitude: -17.847550 * North-bound Latitude: 28.456590 * East-bound Longitude: -17.845260

Event(s):

Control_Zone_4 * Latitude: 28.456590 * Longitude: -17.847550

Transition25 * Latitude: 28.455980 * Longitude: -17.845440

Transition75 * Latitude: 28.455950 * Longitude: -17.845700

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-15.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		González-Delgado, Sara
2	Type of study	Study type		González-Delgado, Sara
3	Identification	ID		González-Delgado, Sara
4	Rank	Rank		González-Delgado, Sara
5	Scientific name	Scientific name		González-Delgado, Sara
6	Identity	Ident	%	González-Delgado, Sara		best
7	Kingdom	Kingdom		González-Delgado, Sara		super
8	Kingdom	Kingdom		González-Delgado, Sara
9	Phylum	Phylum		González-Delgado, Sara
10	Class	Class		González-Delgado, Sara
11	Order	Order		González-Delgado, Sara
12	Family	Family		González-Delgado, Sara
13	Genus	Genus		González-Delgado, Sara
14	Species	Species		González-Delgado, Sara
15	Group	Group		González-Delgado, Sara		1
16	Group	Group		González-Delgado, Sara		2
17	Group	Group		González-Delgado, Sara		3
18	Site	Site		González-Delgado, Sara
19	Reads	Reads	#	González-Delgado, Sara		1, large (>1 mm)
20	Reads	Reads	#	González-Delgado, Sara		1, 64 µm- 1 mm
21	Reads	Reads	#	González-Delgado, Sara		2, large (>1 mm)
22	Reads	Reads	#	González-Delgado, Sara		2, 64 µm- 1 mm
23	Reads	Reads	#	González-Delgado, Sara		3, large (>1 mm)
24	Reads	Reads	#	González-Delgado, Sara		3, 64 µm- 1 mm
25	Reads	Reads	#	González-Delgado, Sara		4, large (>1 mm)
26	Reads	Reads	#	González-Delgado, Sara		4, 64 µm- 1 mm
27	Reads	Reads	#	González-Delgado, Sara		5, large (>1 mm)
28	Reads	Reads	#	González-Delgado, Sara		5, 64 µm- 1 mm
29	Reads	Reads	#	González-Delgado, Sara		6, large (>1 mm)
30	Reads	Reads	#	González-Delgado, Sara		6, 64 µm- 1 mm
31	pH, total scale	pHT		González-Delgado, Sara		total scale, low tide
32	pH, standard deviation	pH std dev	±	González-Delgado, Sara		low tide
33	Alkalinity, total	AT	µmol/kg	González-Delgado, Sara		low tide
34	Alkalinity, total, standard deviation	AT std dev	±	González-Delgado, Sara		low tide
35	Calcite saturation state	Omega Cal		González-Delgado, Sara		low tide
36	Calcite saturation state, standard deviation	Omega Cal std dev	±	González-Delgado, Sara		low tide
37	Aragonite saturation state	Omega Arg		González-Delgado, Sara		low tide
38	Aragonite saturation state, standard deviation	Omega Arg std dev	±	González-Delgado, Sara		low tide
39	Salinity	Sal		González-Delgado, Sara		low tide
40	Temperature, water	Temp	°C	González-Delgado, Sara		low tide
41	pH, total scale	pHT		González-Delgado, Sara		total scale, high tide
42	pH, standard deviation	pH std dev	±	González-Delgado, Sara		high tide
43	Alkalinity, total	AT	µmol/kg	González-Delgado, Sara		high tide
44	Alkalinity, total, standard deviation	AT std dev	±	González-Delgado, Sara		high tide
45	Calcite saturation state	Omega Cal		González-Delgado, Sara		high tide
46	Calcite saturation state, standard deviation	Omega Cal std dev	±	González-Delgado, Sara		high tide
47	Aragonite saturation state	Omega Arg		González-Delgado, Sara		high tide
48	Aragonite saturation state, standard deviation	Omega Arg std dev	±	González-Delgado, Sara		high tide
49	Salinity	Sal		González-Delgado, Sara		high tide
50	Temperature, water	Temp	°C	González-Delgado, Sara		high tide
51	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
53	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
54	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
55	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
56	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
57	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
58	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
59	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	low tide
60	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
61	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
62	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
63	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
64	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
65	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
66	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide
67	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	high tide

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

216880 data points

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