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PANGAEA.
Data Publisher for Earth & Environmental Science
Abstract:
The Tara Pacifc expedition (2016–2018) provided an opportunity to investigate calcifcation patterns in extant corals throughout thePacifc Ocean. Cores from colonies of the massive Porites and Diploastrea genera were collected fromdiferent environments to assess calcifcation parameters of long-lived reef-building corals. In this study, we compared the calcifcation and carbonate chemistryup-regulation of Diploastrea heliopora and Porites corals from across a range of environments. To this, we analyzed the skeletal geochemistry and growth parameters of 39 colonies of Porites (n=33) and Diploastrea (n=6) collected across the tropical Pacifc Ocean during the Tara Pacifc expedition (2016–2018). Te collected corals represent a suite of cores exposed to various hydrological conditions of seawater temperature (SST: 22.4–29.8 °C), salinity (SSS: 31.5–36.1), and carbonate chemistry (total scale pHsw: 8.01–8.09). Te average chemical composition of the calcifying fuid (pHcf, [CO32−]cf, DICcf, Ωcf) was derived from paired boron isotope (δ11B) and B/Ca analyses of core-top samples corresponding to the last 6 years of growth (2010–2016). Based on these data, we assessed the impact of the ambient seawater properties (SST, salinity, carbonate chemistry) on the cf composition of these slow-growing reef-building genera at the Pacifc basin scale.
Keyword(s):
Acid-base regulation; Animalia; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Diploastrea heliopora; Field observation; Growth/Morphology; North Pacific; Porites sp.; Single species; South Pacific; Temperate; Tropical
Related to:
Related code / software:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Median Latitude: -4.533336 * Median Longitude: 172.420074 * South-bound Latitude: -27.066700 * West-bound Longitude: 121.483300 * North-bound Latitude: 27.083300 * East-bound Longitude: -81.783300
Date/Time Start: 2016-07-23T00:00:00 * Date/Time End: 2018-08-25T00:00:00
Minimum DEPTH, water: m * Maximum DEPTH, water: 20 m
Event(s):
Abaiang_Kiribati  * Latitude: 1.716700 * Longitude: 172.966700 * Date/Time: 2017-01-09T00:00:00
Aitutaki_Cook_New_Zeland  * Latitude: -18.833300 * Longitude: -159.800000 * Date/Time: 2016-11-14T00:00:00
Anakena_Isla_de_Pascua_Chile  * Latitude: -27.066700 * Longitude: -109.316700 * Date/Time: 2016-09-03T00:00:00
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-04-08.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventCanesi, Marine
Date/Time of eventDate/TimeCanesi, Marine
Type of studyStudy typeCanesi, Marine
SpeciesSpeciesCanesi, Marine
IdentificationIDCanesi, MarineFig 1
LocationLocationCanesi, Marine
Sample IDSample IDCanesi, Marine
LATITUDELatitudeCanesi, MarineGeocode
LONGITUDELongitudeCanesi, MarineGeocode
10 DEPTH, waterDepth watermCanesi, MarineGeocode
11 Temperature, waterTemp°CCanesi, Marine
12 SalinitySalCanesi, Marine
13 Boron/Calcium ratioB/Caµmol/molCanesi, Marine
14 δ11Bδ11B‰ SRMCanesi, Marine
15 Calcifying fluid, pHCF pHCanesi, Marine
16 Calcifying fluid, carbonate ionCF [CO3]2-µmol/kgCanesi, Marine
17 Calcifying fluid, dissolved inorganic carbonCF DICµmol/kgCanesi, Marine
18 Calcifying fluid, aragonite saturation stateCF Omega ArgCanesi, Marine
19 Linear extensionLin extcm/aCanesi, Marinemeasured along the same 3 transects of density change measurements
20 Linear extensionLin extcm/aCanesi, Marinemeasured on 3 different slices of coral core CT-scans
21 DensityDensityg/cm3Canesi, Marine
22 Calcification rateCalc rateg/cm2/aCanesi, Marine
23 Temperature, waterTemp°CCanesi, Marinepunctual seawater properties
24 SalinitySalCanesi, Marinepunctual seawater properties
25 pHpHCanesi, MarineCalculated using CO2SYStotal scale, punctual seawater properties
26 Carbonate ion[CO3]2-µmol/kgCanesi, MarineCalculated using CO2SYSpunctual seawater properties
27 Carbon, inorganic, dissolvedDICµmol/kgCanesi, MarineCalculated using CO2SYSpunctual seawater properties
28 Aragonite saturation stateOmega ArgCanesi, MarineCalculated using CO2SYSpunctual seawater properties
29 Temperature, waterTemp°CCanesi, Marineintegrated seawater properties
30 SalinitySalCanesi, Marineintegrated seawater properties
31 pHpHCanesi, Marinetotal scale, integrated seawater properties
32 Carbonate ion[CO3]2-µmol/kgCanesi, Marineintegrated seawater properties
33 Carbon, inorganic, dissolvedDICµmol/kgCanesi, Marineintegrated seawater properties
34 Aragonite saturation stateOmega ArgCanesi, Marineintegrated seawater properties
35 Alkalinity, totalATµmol/kgCanesi, MarinePotentiometric titration
36 Carbon, inorganic, dissolvedDICµmol/kgCanesi, MarinePotentiometric titration
37 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
38 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale, punctual seawater properties
39 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
40 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
41 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
42 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
43 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
44 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
45 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)punctual seawater properties
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1532 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Date/Time

Study type

Species

ID
(Fig 1)

Location

Sample ID

Latitude

Longitude
10 
Depth water [m]
11 
Temp [°C]
12 
Sal
13 
B/Ca [µmol/mol]
14 
δ11B [‰ SRM]
15 
CF pH
16 
CF [CO3]2- [µmol/kg]
17 
CF DIC [µmol/kg]
18 
CF Omega Arg
19 
Lin ext [cm/a]
(measured along the same 3 tra...)
20 
Lin ext [cm/a]
(measured on 3 different slice...)
21 
Density [g/cm3]
22 
Calc rate [g/cm2/a]
23 
Temp [°C]
(punctual seawater properties)
24 
Sal
(punctual seawater properties)
25 
pH
(total scale, punctual seawate...)
26 
[CO3]2- [µmol/kg]
(punctual seawater properties,...)
27 
DIC [µmol/kg]
(punctual seawater properties,...)
28 
Omega Arg
(punctual seawater properties,...)
29 
Temp [°C]
(integrated seawater properties)
30 
Sal
(integrated seawater properties)
31 
pH
(total scale, integrated seawa...)
32 
[CO3]2- [µmol/kg]
(integrated seawater properties)
33 
DIC [µmol/kg]
(integrated seawater properties)
34 
Omega Arg
(integrated seawater properties)
35 
AT [µmol/kg]
(Potentiometric titration)
36 
DIC [µmol/kg]
(Potentiometric titration)
37 
CSC flag
(Calculated using seacarb afte...)
38 
pH
(total scale, punctual seawate...)
39 
CO2 [µmol/kg]
(punctual seawater properties,...)
40 
fCO2water_SST_wet [µatm]
(punctual seawater properties,...)
41 
pCO2water_SST_wet [µatm]
(punctual seawater properties,...)
42 
[HCO3]- [µmol/kg]
(punctual seawater properties,...)
43 
[CO3]2- [µmol/kg]
(punctual seawater properties,...)
44 
Omega Arg
(punctual seawater properties,...)
45 
Omega Cal
(punctual seawater properties,...)
Coiba_Panama 2016-07-23fieldPorites spp.1Coiba (Panama)I2S3c217.2000-81.7833828.5931.5243025.008.541198426719.720.880.981.481.3028.1731.798.0118618223.0628.5931.528.0319517913.212088.451822.10158.0110.71401.24402.471622.69188.693.104.69
Anakena_Isla_de_Pascua_Chile 2016-09-03fieldPorites spp.2"Anakena, Isla de Pascua (Chile)"I4S1-27.0667-109.31671422.4536.0454024.318.541040402116.091.001.141.501.5020.8435.728.0620120663.1222.4536.048.0521020693.262352.082066.25158.0712.05381.86383.151850.44203.773.164.85
Motu_Taka_Rua_Isla_de_Pascua_Chile 2016-09-07fieldPorites spp.3"Motu Taka Rua, Isla de Pascua (Chile)"I5S4-27.0667-109.31671422.4436.0555023.718.50969398914.921.331.221.191.5820.8636.048.0720620713.1922.4436.058.0521020703.262361.502072.00158.0712.01381.61382.891853.87206.123.194.89
Tekava_Gambier_French_Polynesia 2016-09-23fieldPorites spp.4"Tekava, Gambier (French Polynesia)"I6S2-23.1500-134.8333925.1736.0847023.698.461121456317.590.830.961.531.2722.8435.878.0721520423.3625.1736.088.0623020423.612348.702041.60158.0711.19374.55375.781812.46217.953.405.19
Moorea_French_Polynesia_1 2016-11-08fieldPorites spp.5Moorea (French Polynesia)I7S1c1-17.4667-149.8000327.7735.9148025.608.561291422420.601.201.161.321.5828.2436.038.0424220243.8727.7735.918.0624820043.952368.632024.10158.0510.46400.90402.131768.94244.703.915.87
Moorea_French_Polynesia_2 2016-11-09fieldPorites spp.6Moorea (French Polynesia)I7S3c2-17.4833-149.75001327.7735.8650024.748.501164412418.401.251.181.441.8028.2536.038.0524820253.9627.7735.868.0624720023.942378.802025.40158.0610.15389.14390.341764.38250.874.016.02
Aitutaki_Cook_New_Zeland 2016-11-14fieldPorites spp.7"Aitutaki, Cook (New Zeland)"I8S1c3-18.8333-159.80001427.0935.6744023.148.411125480117.791.001.041.241.2427.2935.438.0523419873.7427.0935.678.0724219963.852321.601986.50158.0610.17380.01381.191739.19237.143.795.71
S_Niue_New_Zeland 2016-11-22fieldPorites spp.8S Niue (New Zeland)I9S1c4-19.1000-169.90001227.0035.4445023.968.461174459218.651.201.231.621.9428.1834.808.0624320193.9227.0035.448.0723919853.812363.252018.75158.0610.13385.29386.481762.58246.043.975.96
W_Niue_New_Zeland 2016-11-24fieldPorites spp.9W Niue (New Zeland)I9S2c5-18.9833-169.90001527.1435.4350024.558.501135414517.980.860.891.511.3028.3134.738.0523219633.7527.1435.438.0724019833.832294.451962.80158.0510.08384.53385.711717.70235.023.795.70
Upolu_Samoa 2016-11-30fieldPorites spp.10Upolu (Samoa)I10S0c6-13.8333-172.0667928.8135.1742023.218.401154485218.531.001.091.391.3931.2734.487.9621319563.4928.8135.178.0624319623.912256.801955.95157.9711.78480.28481.701729.26214.923.545.26
CSR_11_Wallis_France 2016-12-18fieldPorites spp.11"CSR 11, Wallis (France)"I11S1c7-13.3000-176.20002028.9735.0646024.298.461171435018.770.670.881.350.9029.6534.148.0322819263.7228.9735.068.0524219563.902251.801926.30158.0410.06394.63395.821685.80230.453.765.63
Abaiang_Kiribati 2017-01-09fieldPorites spp.12Abaiang (Kiribati)I13S3c81.7167172.9667728.9734.8940023.298.401242516419.941.331.381.211.6128.6835.138.0021719973.5028.9734.898.0122119773.582305.031997.23158.0011.68450.12451.501765.79219.763.555.32
Pisinun_Chuuk_Micronesia 2017-01-22fieldPorites spp.13"Pisinun, Chuuk (Micronesia)"I14S2c97.1333151.8833829.2334.0941023.118.391134485118.401.001.091.391.3928.9833.828.0321719133.5429.2334.098.0523219063.772223.901913.37158.0310.33398.44399.661683.10219.943.595.39
Guam_USA 2017-01-29fieldPorites spp.14Guam (USA)I15S1c1013.2333144.6333928.9234.4638024.058.451359522621.960.750.991.611.2128.1834.298.0322019403.5628.9234.468.0523419283.792253.801939.63158.0410.42395.30396.511706.57222.653.615.42
Ogasawara_Japan 2017-02-10fieldPorites spp.15Ogasawara (Japan)I16S2c1127.0833142.2167524.3034.7853024.838.551082394517.040.670.661.320.8820.7434.828.1020820183.2424.3034.788.0721419783.392315.302017.93158.1110.81340.12341.271796.31210.813.295.05
Sesoko_Okinawa_Japan 2017-04-13fieldPorites spp.16"Sesoko, Okinawa (Japan)"I1726.6333127.8500624.8834.7150024.068.501060418016.721.141.141.091.2421.7134.968.0820520023.2124.8834.718.0822119633.512295.702002.35158.0911.01355.85357.041783.59207.753.254.98
NW_Fiji 2017-06-03fieldPorites spp.17NW FijiI18S1-17.3667177.1167728.0335.0841023.078.401177505118.791.251.201.271.5928.2734.398.0221619383.4928.0335.088.0724119583.882257.931941.33158.0410.38394.89396.101706.66224.293.635.46
Heron_S_GBR_Australia 2017-08-30fieldPorites spp.18"Heron, S GBR (Australia)"I19S1c13-23.4333151.9000724.4335.3948023.418.461053447316.551.000.891.131.1322.3335.518.0821520293.3624.4335.398.0923019953.622336.432028.97158.0910.89358.88360.071800.12217.953.415.20
SW_Cockatoo_Reef_GBR_Australia 2017-09-03fieldPorites spp.19"SW Cockatoo Reef, GBR (Australia)"I19S3c14-20.7667150.8833725.4935.3647023.078.421050459116.541.501.571.281.9223.1835.448.0621420303.3625.4935.368.0823419873.702334.832029.73158.0711.11374.46375.691801.82216.793.405.18
Noumea_Lagoon_New_Caledonia 2017-09-25fieldPorites spp.20Noumea Lagoon (New Caledonia)I21S2c16-22.5333166.43331224.4935.4452024.758.541098399017.141.001.061.451.4522.8735.848.0821920283.4124.4935.448.0822820013.592340.802028.15158.0810.83362.56363.751796.04221.283.465.27
E_Vangunu_Salomon 2017-10-23fieldPorites spp.21E Vangunu (Salomon)I22S2c1-8.6000158.1833429.4334.6143024.918.501309456621.181.501.671.372.0629.8434.008.0121419063.5129.4334.618.0523719343.852212.451906.05158.0110.67420.14421.411678.45216.933.555.32
E_Vangunu_Salomon2017-10-23fieldPorites spp.22E Vangunu (Salomon)I22S2c2-8.6000158.1833429.4334.6142023.448.411175481819.041.291.251.251.6129.3334.098.0422819063.7229.4334.618.0523719343.852212.451906.05158.0110.67420.14421.411678.45216.933.555.32
Losuia_Tabungora_Island_PNG 2017-11-06fieldPorites spp.23"Losuia, Tabungora Island (PNG)"I23S2-9.3500152.03331328.6934.6342023.828.441209476919.481.000.991.541.5429.2334.348.0523419283.8128.6934.638.0523319403.772260.401933.95158.0410.08392.03393.221692.80231.073.765.64
Kimbe_Hoskins_District_PNG 2017-11-17fieldPorites spp.24"Kimbe, Hoskins District (PNG)"I24S2c2-5.0833150.20001729.7534.4141023.388.401196491119.351.171.171.361.5930.8434.138.0423218653.8229.7534.418.0423519243.822224.931896.13158.039.85397.27398.451654.49231.793.815.69
N_Hoskins_District_PNG 2017-11-20fieldPorites spp.25N Hoskins District (PNG)I24S3c22-5.2000150.3833629.7634.4139023.608.411286518920.971.501.631.231.8530.7133.228.0623818883.9429.7634.418.0423419243.822212.901881.25158.059.40376.03377.151637.51234.353.885.80
Helen_Reef_Palau_1 2017-12-22fieldPorites spp.26Helen Reef (Palau)I25S1c12.9500131.8000329.3234.1743023.328.401109463318.031.001.061.291.2929.7133.868.0723818593.8929.3234.178.0523119143.762207.171877.40158.059.42369.75370.861636.22231.753.805.69
Helen_Reef_Palau_2 2017-12-23fieldPorites spp.27Helen Reef (Palau)I25S1c22.9500131.7500929.3234.1743023.218.401110469118.021.131.161.261.4229.2333.877.9920519113.3429.3234.178.0423019143.752202.501910.90158.0011.16433.09434.401692.74207.003.385.07
North_Palau 2018-01-06fieldPorites spp.28North PalauI26S1c267.7833134.58331629.1633.9939023.908.441297505020.931.000.941.551.5529.1133.818.0522618713.6929.1633.998.0523019023.742201.301886.17158.049.92383.64384.811654.24222.013.625.44
Koror_Palau 2018-01-14fieldPorites spp.29Koror (Palau)I26S2 control 17.2833134.3500429.2033.9840023.218.401176496819.061.401.381.512.1129.7033.578.0321918723.5929.2033.988.0523019013.76
Koror_Palau2018-01-14fieldPorites spp.30Koror (Palau)I26S2 control 27.2833134.3500429.2033.9839022.768.371153514218.711.501.251.522.2829.7033.578.0321918723.5929.2033.988.0523019013.76
Green_Island_Taiwan 2018-03-24fieldPorites spp.31Green Island (Taiwan)I28S322.6500121.4833326.8234.3248024.978.541175416618.820.780.811.501.1726.0434.188.0521619633.4526.8234.328.0622419333.602270.801965.25158.0510.63382.74383.951737.43217.193.485.27
Clipperton_France 2018-08-09fieldPorites spp.32Clipperton (France)I31S310.3000-109.20001028.3633.3444023.378.421066447817.291.331.421.021.3628.2933.368.0321219023.4528.3633.348.0220618963.352200.481899.35158.0310.40393.91395.121675.58213.363.485.24
Secas_islands_Panama 2018-08-25fieldPorites spp.33Secas islands (Panama)I32S17.9500-82.0500328.9632.2541024.868.521289460921.111.141.181.251.4329.0431.048.0319217693.1828.9632.258.0420518233.382040.451818.28157.9213.91529.88531.501643.64160.722.674.03
Noumea_Lagoon_New_Caledonia2017-09-25fieldDiploastrea spp.20Noumea Lagoon (New Caledonia)I21S2c17-22.5333166.43331524.4935.4450024.398.521110420217.360.271.950.5322.8735.848.0821920283.4124.4935.448.0822820013.592340.802028.15158.0810.83362.56363.751796.04221.283.465.27
Losuia_Tabungora_Island_PNG2017-11-06fieldDiploastrea spp.23"Losuia, Tabungora Island (PNG)"I23S2-9.3500152.03331328.6934.6344023.368.411122464818.020.501.520.7629.2334.348.0523419283.8128.6934.638.0523319403.772260.401933.95158.0410.08392.03393.221692.80231.073.765.64
Kimbe_Hoskins_District_PNG2017-11-17fieldDiploastrea spp.24"Kimbe, Hoskins District (PNG)"I24S2c3-5.0833150.2000829.7534.4143022.088.31980471515.910.501.480.7430.8434.138.0423218653.8229.7534.418.0423519243.822224.931896.13158.039.85397.27398.451654.49231.793.815.69
N_Hoskins_District_PNG2017-11-20fieldDiploastrea spp.25"W Garua, N Hoskins District (PNG)"I24S3c23-5.2000150.3833729.7634.4141022.298.331069502217.390.501.450.7330.7133.228.0623818883.9429.7634.418.0423419243.822212.901881.25158.059.40376.03377.151637.51234.353.885.80
North_Palau2018-01-06fieldDiploastrea spp.28North PalauI26S17.7833134.58331629.1633.9941022.108.321023494916.600.501.590.8029.1133.818.0522618713.6929.1633.998.0523019023.742201.301886.17158.049.92383.64384.811654.24222.013.625.44
Green_Island_Taiwan2018-03-24fieldDiploastrea spp.31Green Island (Taiwan)I28S322.6500121.48331326.8234.3246022.958.411030453816.370.601.580.9526.0434.188.0521619633.4526.8234.328.0622419333.602270.801965.25158.0510.63382.74383.951737.43217.193.485.27