Citation:

PANGAEA.966343

Name: Seawater carbonate chemistry and critical thermal tolerance, metabolism and survival of embryos of Pacific herring (Clupea pallasii)
Published: 2024-03-11
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Clupea pallasii; Coast and continental shelf; Development; Laboratory experiment; Mortality/Survival; Nekton; North Pacific; Other studied parameter or process; Pelagos; Reproduction; Respiration; Single species; Temperate; Temperature

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Abstract:

These data were collected at Shannon Point Marine Center in Washington, U.S.A. in March and May, 2021. Embryos were reared at either 10°C (ambient) or 16°C (heightened) and at either ~500 pCO2 uatm (ambient) or ~2000 pCO2 uatm (heightened). These data measure the response of winter-spawned Pacific herring embryos to critical thermal maximum excursions (CTmax) up to either 20°C or 25°C for 1, 2, or 3 hours of exposure. Percent survival was evaluated between rearing temperature and pCO2 level, maximum CTmax temperature, and duration of exposure to CTmax. The results evaluate if rearing conditions affect survival during a marine heatwave and the CTmax temperature and duration at which survival diminishes. Heart contractions assessed cardiac stress in embryos post-CTmax trials. Daily and cumulative hatching response of embryos in both March and May were measured. Hatching success (%), malformation rates in embryos (%) and malformation rates in hatched larvae (%) were measured. Oxygen consumption rates (MO2) response of winter-spawned Pacific herring embryos to variations in rearing temperature and pCO2 levels were measured.

Keyword(s):

Animalia; Bottles or small containers/Aquaria (<20 L); Chordata; Clupea pallasii; Coast and continental shelf; Development; Laboratory experiment; Mortality/Survival; Nekton; North Pacific; Other studied parameter or process; Pelagos; Reproduction; Respiration; Single species; Temperate; Temperature

Supplement to:

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2023): The combined effects of acidification and acute warming on the embryos of Pacific herring (Clupea pallasii). Frontiers in Marine Science, 10, 1307617, https://doi.org/10.3389/fmars.2023.1307617

Source:

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2021): Critical Thermal Maximum in embryonic Pacific herring. SEANOE, https://doi.org/10.17882/96693

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2021): Daily and Cumulative Hatching in embryonic Pacific herring. SEANOE, https://doi.org/10.17882/96695

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2021): Hatching Morphometrics in embryonic Pacific herring. SEANOE, https://doi.org/10.17882/96696

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2021): Heart contractions in CTmax-exposed Pacific herring embryos. SEANOE, https://doi.org/10.17882/96694

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2021): Incubation conditions data for embryonic Pacific herring experiment. SEANOE, https://doi.org/10.17882/96697

Singh, Nicole R; Love, Brooke A; Murray, Christopher S; Sobocinski, Kathryn L; Cooper, W James (2021): Respirometry (MO2) in embryonic Pacific herring. SEANOE, https://doi.org/10.17882/96698

Documentation:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Median Latitude: 48.358050 * Median Longitude: -122.666000 * South-bound Latitude: 47.854300 * West-bound Longitude: -122.748200 * North-bound Latitude: 48.861800 * East-bound Longitude: -122.583800

Event(s):

Cherry_Point * Latitude: 48.861800 * Longitude: -122.748200 * Method/Device: Experiment (EXP)

Port_Gamble * Latitude: 47.854300 * Longitude: -122.583800 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-03-11.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Event label	Event		Singh, Nicole R
2	Type of study	Study type		Singh, Nicole R
3	Species, unique identification	Species UID		Singh, Nicole R
4	Species, unique identification (URI)	Species UID (URI)		Singh, Nicole R
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Singh, Nicole R
6	Date	Date		Singh, Nicole R		fertilization
7	Date	Date		Singh, Nicole R		CTmax trials
8	Time in hours	Time	h	Singh, Nicole R		post fertilization
9	Time in hours	Time	h	Singh, Nicole R		embryos at CTmax trials
10	Date	Date		Singh, Nicole R		assessment for survival
11	Time in days	Time	days	Singh, Nicole R		embryos during assessment
12	Identification	ID		Singh, Nicole R		experimental rearing tank
13	Replicate	Repl		Singh, Nicole R		cup
14	Treatment	Treat		Singh, Nicole R		temperature
15	Treatment	Treat		Singh, Nicole R		pCO2
16	Temperature, water	Temp	°C	Singh, Nicole R		maximum temperature of exposure (0, 10, 16 = control)
17	Temperature, water	Temp	°C	Singh, Nicole R		Ctmax_temp_degabove
18	Time in hours	Time	h	Singh, Nicole R		exposure to CTmax temperature
19	Number	n	#	Singh, Nicole R		embryos assessed as alive
20	Number	n	#	Singh, Nicole R		embryos assessed as dead
21	Number	n	#	Singh, Nicole R		embryos assessed at moribund
22	Number	n	#	Singh, Nicole R		eggs not included in survival assessment
23	Proportion of survival	Survival		Singh, Nicole R		alive divided by (alive + dead + moribund)
24	Date	Date		Singh, Nicole R		assay
25	Date	Date		Singh, Nicole R		CTmax trials
26	Proportion	Prop		Singh, Nicole R		healthy
27	Sampling date/time, experiment	Date/time sampling exp		Singh, Nicole R
28	Heart beat rate	Heart beat	#/min	Singh, Nicole R
29	Date	Date		Singh, Nicole R		fertilization
30	Date	Date		Singh, Nicole R		embryos hatching
31	Identification	ID		Singh, Nicole R		associated header tank with pCO2-adjusted water
32	Time in days	Time	days	Singh, Nicole R		post fertilization upon hatching
33	Larvae	Larvae	#	Singh, Nicole R		healthy hatchlings
34	Larvae	Larvae	#	Singh, Nicole R		deformed hatchlings
35	Larvae	Larvae	#	Singh, Nicole R		dead hatchlings
36	Larvae	Larvae	#	Singh, Nicole R		hatched
37	Number	n	#	Singh, Nicole R		total eggs in each replicate cup
38	Proportion	Prop		Singh, Nicole R		hatchlings assessed daily (daily healthy_larvae + daily deformed_hatch / hatch_number)
39	Proportion	Prop		Singh, Nicole R		hatchlings per replicate cup assessed cumulatively (cumulative healthy_larvae + cumulative deformed_hatch / hatch_number)
40	Proportion	Prop		Singh, Nicole R		cumulative deformed_larvae (cumulative deformed_larvae / hatch_number)
41	Number	n	#	Singh, Nicole R		total embryos in each cup
42	Larvae	Larvae	#	Singh, Nicole R		total number of hatchlings
43	Proportion	Prop		Singh, Nicole R		healthy larvae (healthy / total)
44	Larvae	Larvae	#	Singh, Nicole R		deformed hatched larvae
45	Proportion	Prop		Singh, Nicole R		deformed embryos (abnormalities / total)
46	Proportion	Prop		Singh, Nicole R		deformed hatched larvae (abnormalities / total_hatch)
47	Time in days	Time	days	Singh, Nicole R		time to peak hatch
48	Time in days	Time	days	Singh, Nicole R		time to first hatch
49	Egg hatching success	Egg hatch success	%	Singh, Nicole R
50	Number	n	#	Singh, Nicole R		run number of measurements
51	Date/Time local	Date/Time local		Singh, Nicole R		measurement
52	Oxygen	O2	µmol/l	Singh, Nicole R		dissolved
53	Identification	ID		Singh, Nicole R		run
54	Volume	Vol	ml	Singh, Nicole R		vial
55	Egg, mass average	Egg m average	mg	Singh, Nicole R
56	Salinity	Sal		Singh, Nicole R
57	pH	pH		Singh, Nicole R		NBS scale
58	pH, standard deviation	pH std dev	±	Singh, Nicole R		NBS scale
59	Temperature, water	Temp	°C	Singh, Nicole R
60	Temperature, water, standard deviation	Temp std dev	±	Singh, Nicole R
61	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Singh, Nicole R
62	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Singh, Nicole R
63	pH	pH		Singh, Nicole R		total scale
64	pH, standard deviation	pH std dev	±	Singh, Nicole R		total scale
65	Carbon, inorganic, dissolved	DIC	µmol/kg	Singh, Nicole R
66	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Singh, Nicole R
67	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
68	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
69	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
70	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
71	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
72	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
73	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
74	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
75	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

117774 data points

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