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Schauberger, Clemens; Middelboe, Mathias; Glud, Ronnie N (2024): Quantification of microbial cells and virus-like particles in the water column above Atacama Trench [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.965921

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Published: 2024-03-04DOI registered: 2024-04-02

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Abstract:
Water samples were collected using 7.5-Liter Niskin bottles and fixed with 25% electron microscopy graded glutaraldehyde (1% final concentration) and stored at -80°C until quantification by flow cytometry. Samples were measured in triplicates using a BD FACSCanto™ II flow cytometer, after staining with SYBR Green I (Brussaard 2004). The flow rate was 5–7 μl/min, as determined by BD Trucount™ Beads. The laser settings and gating examples can be found in the Supporting Information of Schauberger et al. (2021).
Keyword(s):
Abundance; Bacteria; Deep sea; Hadal trench; prokaryote; virus-like particles
Related to:
Schauberger, Clemens; Middelboe, Mathias; Larsen, Morten; Peoples, Logan M; Bartlett, Douglas H; Kirpekar, Finn; Rowden, Ashley A; Wenzhöfer, Frank; Thamdrup, Bo; Glud, Ronnie N (2021): Spatial variability of prokaryotic and viral abundances in the Kermadec and Atacama Trench regions. Limnology and Oceanography, 66(6), 2095-2109, https://doi.org/10.1002/lno.11711
Funding:
Danish National Research Foundation (DG), grant/award no. DNRF145: Danish Center for Hadal Research, HADAL
Coverage:
Median Latitude: -22.668605 * Median Longitude: -71.353633 * South-bound Latitude: -24.284033 * West-bound Longitude: -72.145983 * North-bound Latitude: -20.304967 * East-bound Longitude: -70.836067
Date/Time Start: 2018-03-06T03:01:00 * Date/Time End: 2018-03-28T06:23:00
Minimum DEPTH, water: m * Maximum DEPTH, water: 7700 m
Event(s):
SO261_7-2  * Latitude: -23.820800 * Longitude: -70.836067 * Date/Time: 2018-03-06T03:01:00 * Elevation: -2549.1 m * Campaign: SO261 * Basis: Sonne_2 * Method/Device: CTD/Rosette (CTD-RO)
SO261_19-1  * Latitude: -24.284033 * Longitude: -71.423350 * Date/Time: 2018-03-07T23:38:00 * Elevation: -7830.4 m * Campaign: SO261 * Basis: Sonne_2 * Method/Device: CTD/Rosette (CTD-RO) * Comment: Hadal-Rosette
SO261_34-1  * Latitude: -23.830600 * Longitude: -71.375567 * Date/Time: 2018-03-11T05:33:00 * Elevation: -7894.0 m * Campaign: SO261 * Basis: Sonne_2 * Method/Device: Water sample (WS) * Comment: Hadal-Rosette
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEvent
Station labelStationSchauberger, Clemens
Latitude of eventLatitude
Longitude of eventLongitude
Date/Time of eventDate/Time
Elevation of eventElevationm
DEPTH, waterDepth watermSchauberger, ClemensGeocode
Microbial abundance, cellsMicrobial abund#/mlSchauberger, ClemensFlow cytometry system, Becton Dickinson, FACSCanto II
Microbial abundance, standard deviationMicrobial abund std dev±Schauberger, Clemens
10 Viral abundanceVirus#/mlSchauberger, ClemensFlow cytometry system, Becton Dickinson, FACSCanto II
11 Viral abundance, standard deviationVirus std dev±Schauberger, Clemens
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
658 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Station

Latitude

Longitude

Date/Time

Elevation [m]

Depth water [m]

Microbial abund [#/ml]

Microbial abund std dev [±]
10 
Virus [#/ml]
11 
Virus std dev [±]
SO261_7-2 Site A1-23.8208-70.83612018-03-06T03:01:00-254953.10E0060.00E0001.72E0070.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-2549504.21E0050.00E0002.49E0060.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-25492509.07E0050.00E0002.37E0060.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-25495001.55E0050.00E0005.37E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-25498001.13E0050.00E0003.05E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-254911008.73E0040.00E0002.36E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-254914008.02E0040.00E0002.73E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-254917006.06E0040.00E0001.92E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-254920006.39E0040.00E0001.79E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-254923005.69E0040.00E0005.67E0050.00E000
SO261_7-2Site A1-23.8208-70.83612018-03-06T03:01:00-254924007.63E0040.00E0003.77E0050.00E000
SO261_83-1 Site A2-21.7750-71.20452018-03-22T11:54:00-793752.73E0061.90E0051.23E0075.93E005
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-7937502.90E0054.27E0047.59E0056.98E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-79375001.75E0058.79E0031.79E0052.77E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793710009.22E0044.26E0039.37E0042.47E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793720005.85E0042.08E0038.97E0046.05E003
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793725004.02E0046.20E0036.71E0041.03E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793730003.56E0045.15E0029.27E0043.13E003
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793740002.61E0041.86E0038.88E0043.44E003
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793745002.34E0041.91E0036.59E0041.34E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793750003.19E0042.23E0037.63E0047.98E003
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793755002.06E0041.36E0038.99E0041.26E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793760002.61E0041.18E0039.11E0042.45E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793765002.04E0043.53E0039.02E0041.90E001
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793770002.42E0044.45E0039.10E0041.53E004
SO261_83-1Site A2-21.7750-71.20452018-03-22T11:54:00-793777002.37E0041.90E0037.84E0041.03E004
SO261_62-1 Site A3-23.0524-71.30292018-03-17T03:36:00-799552.12E0066.65E0049.06E0066.07E005
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-7995504.85E0058.82E0031.05E0062.44E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-79955001.93E0056.90E0032.15E0053.64E003
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799510009.00E0041.33E0041.04E0051.63E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799520005.53E0041.15E0036.44E0041.27E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799525004.67E0041.05E0046.27E0041.30E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799530004.03E0048.56E0037.28E0048.03E003
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SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799545002.38E0044.27E0035.73E0041.86E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799550002.75E0045.38E0016.03E0042.75E003
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799555002.89E0042.67E0039.00E0042.24E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799560002.77E0048.36E0027.29E0049.66E003
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799565002.85E0043.18E0036.69E0044.48E003
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799570003.77E0044.25E0038.86E0041.85E004
SO261_62-1Site A3-23.0524-71.30292018-03-17T03:36:00-799577002.70E0045.49E0037.40E0043.92E003
SO261_47-1 Site A4-23.3836-71.34502018-03-13T23:22:00-806652.01E0061.18E0051.54E0072.11E006
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-8066504.54E0058.80E0041.16E0062.28E005
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-80665002.27E0052.97E0046.82E0054.53E004
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806610008.12E0044.11E0031.32E0055.00E003
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806620003.34E0045.23E0036.30E0042.75E003
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806625002.97E0043.83E0037.38E0041.81E002
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806630002.24E0041.83E0037.76E0043.53E003
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806640002.42E0042.79E0036.02E0041.01E004
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806645002.72E0045.50E0026.59E0041.28E003
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806650002.95E0046.67E0038.28E0042.99E004
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806655002.77E0042.88E0037.39E0046.65E003
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806660002.55E0043.40E0039.16E0042.21E004
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806665002.73E0042.87E0039.05E0042.41E004
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806670003.00E0043.01E0039.38E0045.12E003
SO261_47-1Site A4-23.3836-71.34502018-03-13T23:22:00-806677002.74E0041.97E0038.33E0041.77E004
SO261_34-1 Site A5-23.8306-71.37562018-03-11T05:33:00-789452.20E0063.06E0051.32E0071.82E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-7894504.34E0052.82E0047.13E0051.72E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-78945002.14E0051.45E0041.57E0056.01E003
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789410007.98E0047.75E0032.74E0052.75E005
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789420005.93E0044.25E0037.38E0041.69E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789425003.75E0044.33E0037.14E0041.54E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789430003.52E0042.95E0037.23E0049.93E003
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789440003.33E0042.07E0038.59E0042.71E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789450002.84E0041.52E0037.01E0047.88E003
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789455002.28E0043.80E0037.87E0044.80E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789460003.93E0041.37E0034.49E0041.69E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789465003.26E0041.17E0021.15E0054.54E003
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789470002.62E0041.62E0037.73E0041.76E004
SO261_34-1Site A5-23.8306-71.37562018-03-11T05:33:00-789475002.54E0042.14E0037.61E0041.81E003
SO261_19-1 Site A6-24.2840-71.42332018-03-07T23:38:00-783052.75E0061.42E0051.32E0075.60E005
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-7830501.13E0061.63E0041.78E0062.67E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-78305002.05E0057.44E0032.54E0053.57E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783010001.01E0052.28E0041.59E0052.29E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783020005.36E0041.39E0031.05E0051.19E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783030003.42E0042.45E0031.11E0051.79E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783040002.69E0041.12E0039.89E0047.56E003
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783045003.61E0043.03E0021.04E0054.00E003
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783050003.51E0043.48E0031.10E0051.48E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783055003.34E0041.03E0031.29E0055.10E003
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783060001.76E0035.97E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783065002.92E0043.44E0031.12E0051.45E004
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783070002.92E0046.94E0031.06E0055.78E003
SO261_19-1Site A6-24.2840-71.42332018-03-07T23:38:00-783075002.96E0041.30E0031.21E0051.49E004
SO261_74-1 Site A7-22.9545-71.62072018-03-20T01:17:00-553452.04E0062.68E0054.29E0061.00E006
SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-5534502.20E0064.82E0042.53E0064.02E005
SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-55345001.91E0052.21E0039.43E0042.53E004
SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-553410007.91E0041.56E0046.89E0042.34E004
SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-553420003.59E0045.31E0036.47E0045.08E004
SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-553425002.44E0041.67E0036.07E0044.24E004
SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-553430002.04E0042.02E0033.09E0041.18E004
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SO261_74-1Site A7-22.9545-71.62072018-03-20T01:17:00-553454002.84E0042.41E0035.08E0041.09E004
SO261_80-1 Site A8-22.9467-72.14602018-03-21T15:01:00-411852.91E0066.35E0056.49E0066.08E004
SO261_80-1Site A8-22.9467-72.14602018-03-21T15:01:00-4118501.01E0062.32E0051.70E0065.03E005
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SO261_110-1 Site A9-20.3335-70.98992018-03-28T06:23:00-402152.49E0061.30E0059.60E0068.36E004
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SO261_110-1Site A9-20.3335-70.98992018-03-28T06:23:00-402115005.77E0042.68E0033.00E0042.92E003
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SO261_110-1Site A9-20.3335-70.98992018-03-28T06:23:00-402135003.66E0043.61E0033.23E0043.72E003
SO261_110-1Site A9-20.3335-70.98992018-03-28T06:23:00-402140003.00E0042.74E0033.35E0049.93E003
SO261_108-1 Site A10-20.3050-71.29232018-03-27T13:28:00-773052.10E0061.44E0059.70E0061.40E003
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-7730501.90E0061.19E0058.88E0051.13E005
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-77305001.50E0056.08E0031.19E0058.07E004
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-773010009.45E0041.01E0047.27E0041.54E004
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-773020005.95E0042.97E0033.56E0047.06E002
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-773025003.22E0043.72E0033.47E0041.07E004
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-773030003.29E0042.53E0033.65E0043.77E003
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-773040002.33E0046.89E0032.95E0042.46E003
SO261_108-1Site A10-20.3050-71.29232018-03-27T13:28:00-773045002.29E0047.87E0022.91E0046.00E003
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