Citation:

PANGAEA.965884

Name: Seawater carbonate chemistry and reaction norms of two oyster species living in contrasting habitats
Published: 2024-02-27
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea gigas; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Ostrea edulis; Other studied parameter or process; Single species; Temperate

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Abstract:

We deciphered the reaction norms of two oyster species living in contrasting habitats: the intertidal oyster Crassostrea gigas and the subtidal flat oyster Ostrea edulis, which are two economically and ecologically valuable species in temperate ecosystems. Six-month-old oysters of each species were exposed in common garden tanks for 48 days to a pH gradient ranging from 7.7 to 6.4 (total scale). The database contains data from: 1. seawater physico-chemical parameters during the acclimation period, 2. oyster survival during the acclimation period, 3. biometrics of oyster species, 4. shell coloration of oyster species, 5. composition of the membrane fatty acids of oyster species, 6. temporal evolution of the phytoplankton cell volume, 7. fatty acid composition of phytoplankton, 8. energy reserves of oyster species.

Keyword(s):

Animalia; Behaviour; Benthic animals; Benthos; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Crassostrea gigas; Growth/Morphology; Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Ostrea edulis; Other studied parameter or process; Single species; Temperate

Supplement to:

Caillon, Coline; Pernet, Fabrice; Lutier, Mathieu; Di Poi, Carole (2023): Differential reaction norms to ocean acidification in two oyster species from contrasting habitats. Journal of Experimental Biology, 226(23), jeb246432, https://doi.org/10.1242/jeb.246432

Source:

Caillon, Coline; Pernet, Fabrice; Diagne, Moussa; Huber, Matthias; Le Grand, Jacqueline; Le Roy, Valerian; Queau, Isabelle; Quere, Claudie; Lutier, Mathieu; Di Poi, Carole (2023): Data for the determination of the reaction norms of the Pacific oyster and the European flat oyster in response to ocean acidification. SEANOE, https://doi.org/10.17882/95793

Documentation:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2024): seacarb: seawater carbonate chemistry with R. R package version 3.3.3. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 48.376900 * Longitude: -4.424750

Date/Time Start: 2019-05-01T00:00:00 * Date/Time End: 2019-05-31T00:00:00

Event(s):

Bay_of_Brest * Latitude: 48.376900 * Longitude: -4.424750 * Date/Time Start: 2019-05-01T00:00:00 * Date/Time End: 2019-05-31T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2024-02-26.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Di Poi, Carole
2	Figure	Fig		Di Poi, Carole
3	Species, unique identification	Species UID		Di Poi, Carole
4	Species, unique identification (URI)	Species UID (URI)		Di Poi, Carole
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Di Poi, Carole
6	Identification	ID		Di Poi, Carole		tank
7	Treatment: pH	T:pH		Di Poi, Carole
8	pH	pH		Di Poi, Carole		total scale, mean
9	Day of experiment	DOE	day	Di Poi, Carole
10	Code	Code		Di Poi, Carole		0 is censored or alive individual, and 1 is dead individual
11	Shell length	Shell l	mm	Di Poi, Carole
12	Mass	Mass	g	Di Poi, Carole		total body
13	Shell, mass	Shell m	g	Di Poi, Carole
14	Wet mass	Wet m	g	Di Poi, Carole		fresh
15	Growth rate	µ	mm/day	Di Poi, Carole		day 0-41
16	Growth rate	µ	mg/day	Di Poi, Carole		day 0-41
17	Gray level	GL		Di Poi, Carole
18	Fatty acid, common name	FA common		Di Poi, Carole
19	Fatty acids	Fatty acids	%	Di Poi, Carole
20	Cell biovolume	Cell biovol	µm³	Di Poi, Carole		per myl, inlet
21	Cell biovolume	Cell biovol	µm³	Di Poi, Carole		per myl, outlet
22	Ratio	Ratio		Di Poi, Carole
23	Carbohydrates, per unit dry mass	CHO/dm	mg/g	Di Poi, Carole
24	Proteins, total	TPRT	µg/g	Di Poi, Carole
25	pH	pH		Di Poi, Carole	Potentiometric	total scale
26	pH, standard deviation	pH std dev	±	Di Poi, Carole	Potentiometric	total scale
27	Alkalinity, total	AT	µmol/kg	Di Poi, Carole	Potentiometric titration
28	Alkalinity, total, standard deviation	AT std dev	±	Di Poi, Carole	Potentiometric titration
29	Temperature, water	Temp	°C	Di Poi, Carole
30	Temperature, water, standard deviation	Temp std dev	±	Di Poi, Carole
31	Salinity	Sal		Di Poi, Carole
32	Salinity, standard deviation	Sal std dev	±	Di Poi, Carole
33	Oxygen, dissolved	DO	%	Di Poi, Carole
34	Oxygen, dissolved, standard deviation	DO std dev	±	Di Poi, Carole
35	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Di Poi, Carole	Calculated using seacarb
36	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Di Poi, Carole	Calculated using seacarb
37	Carbon, inorganic, dissolved	DIC	µmol/kg	Di Poi, Carole	Calculated using seacarb
38	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Di Poi, Carole	Calculated using seacarb
39	Calcite saturation state	Omega Cal		Di Poi, Carole	Calculated using seacarb
40	Calcite saturation state, standard deviation	Omega Cal std dev	±	Di Poi, Carole	Calculated using seacarb
41	Aragonite saturation state	Omega Arg		Di Poi, Carole	Calculated using seacarb
42	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Di Poi, Carole	Calculated using seacarb
43	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
44	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
45	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
46	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
47	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
49	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
51	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

309590 data points

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