<gco:CharacterString>Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04</gco:CharacterString>

de.pangaea.dataset965589 und de.pangaea.dataset965583 dataset PANGAEA

info@pangaea.de

https://www.pangaea.de/ information pointOfContact 2026-04-30T21:13:33Z https://doi.pangaea.de/10.1594/PANGAEA.965589 <gco:CharacterString>Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04</gco:CharacterString> 2025-02-13T09:47:20 publication


https://doi.org/10.1594/PANGAEA.965589

O'Brien, Phoebe Alexandra Joy

phoebe.obrien@gu.se

https://orcid.org/0009-0008-7263-0024 information author Barrenechea Angeles, Ines

ines.a.angeles@uit.no

https://orcid.org/0000-0002-8051-4110 information author Cermakova, Kristina

kristina.cermakova@id-gene.com

author Jarrossay, Renaud

renaud.jarrossay@etud.univ-angers.fr

author Polovodova Asteman, Irina

irina.polovodova@marine.gu.se

https://orcid.org/0000-0001-7300-5548 information author PANGAEA

info@pangaea.de

https://www.pangaea.de/ information publisher tableDigital The eDNA analysis was done using a DNeasy® PowerLyzer PowerSoil Kit (QIAGEN), processed using the DADA2 pipeline and the taxonomic assignations were estimated using a sequence bank at ID-Gene ecodiagnostics lab in Geneva Switzerland. completed O'Brien, Phoebe Alexandra Joy

phoebe.obrien@gu.se

https://orcid.org/0009-0008-7263-0024 information principalInvestigator eDNA metabarcoding Foraminiferal assemblages heavy metals Pollutants theme <gco:CharacterString>PANGAEA Keyword List</gco:CharacterString> 1995-01-01 creation PANGAEA

info@pangaea.de

https://www.pangaea.de/ information pointOfContact copyright copyright CC-BY-4.0: Creative Commons Attribution 4.0 International textTable und geoscientificInformation 11.2121667 11.4061667 59.051 59.113666 2020-11-10T00:00:00 2020-11-11T00:00:00 Text file thematicClassification Text file (Media Type) thematicClassification Text file (File Size) physicalMeasurement Bytes Bytes File content thematicClassification Metabarcoding text/tab-separated-values unknown https://doi.pangaea.de/10.1594/PANGAEA.965589?format=textfile download dataset The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data. EVENT LABEL: IF20-01D * LATITUDE: 59.090000 * LONGITUDE: 11.376667 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -38.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer metagenome, marine sediment 2020-11-10T00:00:00 EVENT LABEL: IF20-01E * LATITUDE: 59.090000 * LONGITUDE: 11.376667 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -38.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 2) 2020-11-10T00:00:00 EVENT LABEL: IF20-01F * LATITUDE: 59.090000 * LONGITUDE: 11.376667 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -38.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 3) 2020-11-10T00:00:00 EVENT LABEL: IF20-04C * LATITUDE: 59.051000 * LONGITUDE: 11.406167 * DATE/TIME: 2020-11-11T00:00:00 * ELEVATION: -35.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 1) 2020-11-11T00:00:00 EVENT LABEL: IF20-04D * LATITUDE: 59.051000 * LONGITUDE: 11.406167 * DATE/TIME: 2020-11-11T00:00:00 * ELEVATION: -35.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer metagenome, marine sediment (replicate 2) 2020-11-11T00:00:00 EVENT LABEL: IF20-04F * LATITUDE: 59.051000 * LONGITUDE: 11.406167 * DATE/TIME: 2020-11-11T00:00:00 * ELEVATION: -35.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer metagenome, marine sediment (replicate 3) 2020-11-11T00:00:00 EVENT LABEL: IF20-10A * LATITUDE: 59.107833 * LONGITUDE: 11.310167 * DATE/TIME: 2020-11-11T00:00:00 * ELEVATION: -41.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 1) 2020-11-11T00:00:00 EVENT LABEL: IF20-10B * LATITUDE: 59.107833 * LONGITUDE: 11.310167 * DATE/TIME: 2020-11-11T00:00:00 * ELEVATION: -41.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 2) 2020-11-11T00:00:00 EVENT LABEL: IF20-10D * LATITUDE: 59.107833 * LONGITUDE: 11.310167 * DATE/TIME: 2020-11-11T00:00:00 * ELEVATION: -41.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 3) 2020-11-11T00:00:00 EVENT LABEL: IF20-12A * LATITUDE: 59.096333 * LONGITUDE: 11.259833 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -26.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 1) 2020-11-10T00:00:00 EVENT LABEL: IF20-12B * LATITUDE: 59.096333 * LONGITUDE: 11.259833 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -26.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 2) 2020-11-10T00:00:00 EVENT LABEL: IF20-12C * LATITUDE: 59.096333 * LONGITUDE: 11.259833 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -26.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 3) 2020-11-10T00:00:00 EVENT LABEL: IF20-18A * LATITUDE: 59.113666 * LONGITUDE: 11.341000 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -35.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 1) 2020-11-10T00:00:00 EVENT LABEL: IF20-18C * LATITUDE: 59.113666 * LONGITUDE: 11.341000 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -35.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 2) 2020-11-10T00:00:00 EVENT LABEL: IF20-18D * LATITUDE: 59.113666 * LONGITUDE: 11.341000 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -35.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 3) 2020-11-10T00:00:00 EVENT LABEL: REF-B * LATITUDE: 59.085833 * LONGITUDE: 11.212167 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -69.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer metagenome, marine sediment (replicate 1) 2020-11-10T00:00:00 EVENT LABEL: REF-D * LATITUDE: 59.085833 * LONGITUDE: 11.212167 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -69.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 2) 2020-11-10T00:00:00 EVENT LABEL: REF-E * LATITUDE: 59.085833 * LONGITUDE: 11.212167 * DATE/TIME: 2020-11-10T00:00:00 * ELEVATION: -69.0 m * LOCATION: Idefjorden, Sweden * METHOD/DEVICE: Gemini Corer Foraminifera count; metagenome, marine sediment (replicate 3) 2020-11-10T00:00:00 Supplement to <gco:CharacterString>Assessing Environmental Quality in a Historically Polluted Fjord: A Comparison of Benthic Foraminiferal eDNA and Morphospecies Approaches</gco:CharacterString> 2024-01-01 publication


https://doi.org/10.1029/2023JG007781

O'Brien, Phoebe Alexandra Joy

phoebe.obrien@gu.se

https://orcid.org/0009-0008-7263-0024 information author Barrenechea Angeles, Ines

ines.a.angeles@uit.no

https://orcid.org/0000-0002-8051-4110 information author Cermakova, Kristina

kristina.cermakova@id-gene.com

author Pawlowski, Jan

jan.pawlowski@zoo.unige.ch

https://orcid.org/0000-0003-2421-388X information author Alve, Elisabeth

ealve@geologi.uio.no

https://orcid.org/0000-0001-6692-7800 information author Nordberg, Kjell https://orcid.org/0000-0003-0085-4607 information author Polovodova Asteman, Irina

irina.polovodova@marine.gu.se

https://orcid.org/0000-0001-7300-5548 information author documentDigital Journal of Geophysical Research: Biogeosciences 129(12) e2023JG007781