PANGAEA_965589
Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04
O'Brien, Phoebe Alexandra Joy; Barrenechea Angeles, Ines; Cermakova, Kristina; Jarrossay, Renaud; Polovodova Asteman, Irina
Unmodified foraminiferal raw eDNA data in form of 'reads' with ASV, OTU and taxonomic assignations from sediment surface samples at stations REF, IF20-12, IF20-10, IF20-18, IF20-01 and IF20-04
2025-02-13
PANGAEA
Dataset
https://doi.pangaea.de/10.1594/PANGAEA.965589
Investigator
Phoebe Alexandra Joy
O'Brien
phoebe.obrien@gu.se
Earth Science
Text file
Text file (Media Type)
Text file (File Size)
File content
geoscientificInformation
eDNA metabarcoding
Foraminiferal assemblages
Gemini Corer
heavy metals
IF20-01D
IF20-01E
IF20-01F
IF20-04C
IF20-04D
IF20-04F
IF20-10A
IF20-10B
IF20-10D
IF20-12A
IF20-12B
IF20-12C
IF20-18A
IF20-18C
IF20-18D
Pollutants
REF-B
REF-D
REF-E
Metabarcoding
2020-11-10
2020-11-11
Complete
59.051
59.113666
11.2121667
11.4061667
unrestricted
CC-BY-4.0: Creative Commons Attribution 4.0 International
English
PANGAEA
Data Publisher for Earth & Environmental Science
https://www.pangaea.de/
Data Center Contact
Michael
Diepenbroek
info@pangaea.de
Leobener Str.
Bremen
Bremen
28359
Germany
online
2 data points
text/tab-separated-values
O'Brien, Phoebe Alexandra Joy; Barrenechea Angeles, Ines; Cermakova, Kristina; Pawlowski, Jan; Alve, Elisabeth; Nordberg, Kjell; Polovodova Asteman, Irina (2024): Assessing Environmental Quality in a Historically Polluted Fjord: A Comparison of Benthic Foraminiferal eDNA and Morphospecies Approaches. Journal of Geophysical Research: Biogeosciences, 129(12), e2023JG007781, https://doi.org/10.1029/2023JG007781
The eDNA analysis was done using a DNeasy® PowerLyzer PowerSoil Kit (QIAGEN), processed using the DADA2 pipeline and the taxonomic assignations were estimated using a sequence bank at ID-Gene ecodiagnostics lab in Geneva Switzerland. ** For all details see the full metadata description at "https://doi.pangaea.de/10.1594/PANGAEA.965589"!
https://doi.org/10.1029/2023JG007781
Assessing Environmental Quality in a Historically Polluted Fjord: A Comparison of Benthic Foraminiferal eDNA and Morphospecies Approaches
PANGAEA_965583
DIF
9.4
2025-02-13
2026-04-30