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Engels, Stefan; Lane, Christine S; Hoek, Wim Z; Baneschi, Ilaria; Bouwman, Annerieke; Brogan, Eilis; Ramsey, Christopher Bronk; Collins, James A; de Bruijn, Renee; Haliuc, Aritina; Heiri, Oliver; Hubay, Katalin; Jones, Gwydion; Jones, Vivienne; Laug, Andreas; Merkt, Josef; Muschitiello, Francesco; Müller, Meike; Peters, Tom; Peterse, Francien; Pueschel, Ashley; Staff, Richard A; ter Schure, Anneke; van den Bos, Valerie; Wagner-Cremer, Frederike (2024): GDGTs in sediment core Haem13 from lake Hämelsee [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.964381, In: Engels, S et al. (2024): Lake Hämelsee: Lateglacial sedimentological, palaeoecological and geochemical data [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.964375

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Published: 2024-04-17DOI registered: 2024-05-16

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Abstract:
This dataset provides glycerol dialkyl glycerol tetraethers (GDGTs) concentrations for the Lateglacial sediment sequence retrieved from Lake Hämelsee (Germany) in 2013. GDGTs concentrations (ng/g) are presented against both depth (m) and age (cal yr. BP). The GDGTs dataset was used to calculate the GDGT-0/crenarchaeol ratio, which was interpreted to represent lake water oxygenation, which, given the local settings, was likely driven by changes in windiness. Additionally, the GDGT dataset was used to calculate the degree of methylation of 5-methyl brGDGTs (MBT'5me), which can be used to reconstruct past temperature change through translation MBT'5me into mean temperature of the months above freezing. As such, the GDGT data provides information on LGIT climate dynamics at lake Hämelsee. Of the 167 samples used for lipid extraction (see https://doi.pangaea.de/10.1594/PANGAEA.964524), the alcohol/fatty acid fraction of 94 samples was further processed to analyse glycerol dialkyl glycerol tetraethers (GDGTs), which are membrane lipids of certain archaea and bacteria (Schouten et al., 2013). In short, a known amount of internal standard was added to each fraction, which was then redissolved in hexane:isopropanol 99:1 and passed over a 0.45 µm PTFE filter prior to injection on a Agilent 1260 Infinity ultra-high performance liquid chromatograph coupled to an Agilent 6130 single quadrupole mass spectrometer following the settings and elution protocol of Hopmans et al. (2016). A minimum peak area of 3000 and a signal-to-noise ratio of >3 was maintained as detection limit. Quantification of the GDGTs is based on the assumption that the mass spectrometer equally responds to the GDGTs and the internal standard. All analyses were performed in the laboratories of Utrecht University, the Netherlands.
Keyword(s):
alkanes; Biodiversity; Chironomidae; deuterium; diatoms; ecosystem dynamics; GDGTs; Germany; Haemelsee; LOI; Pediastrum; XRF
References:
Hopmans, Ellen C; Schouten, Stefan; Sinninghe Damsté, Jaap S (2016): The effect of improved chromatography on GDGT-based palaeoproxies. Organic Geochemistry, 93, 1-6, https://doi.org/10.1016/j.orggeochem.2015.12.006
Funding:
European Cooperation in Science and Technology (COST), grant/award no. ES0907: ES0907 - INTegrating Ice core, MArine and TErrestrial records - 60,000 to 8000 years ago (INTIMATE)
Coverage:
Latitude: 52.766667 * Longitude: 9.316667
Date/Time Start: 2013-07-08T09:00:00 * Date/Time End: 2013-07-12T17:00:00
Minimum Elevation: 22.0 m * Maximum Elevation: 22.0 m
Event(s):
Haemelsee_Haem13 * Latitude Start: 52.766667 * Longitude Start: 9.316667 * Latitude End: 52.766667 * Longitude End: 9.316667 * Date/Time Start: 2013-07-08T09:00:00 * Date/Time End: 2013-07-12T17:00:00 * Elevation Start: 22.0 m * Elevation End: 22.0 m * Lake water depth: 3.4 m * Location: Lake Haemelsee, Germany * Method/Device: Niederreiter Piston corer (NPC) * Comment: Lake sediment sequence retrieved using a 60 mm piston corer deployed from a floating platform.
Comment:
#0 = below detection limit
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
ORDINAL NUMBEROrd NoEngels, StefanGeocode
DEPTH, sediment/rockDepth sedmEngels, StefanGeocode
AGEAgeka BPEngels, StefanGeocode
Acyclic glycerol dibiphytanyl glycerol tetraether, per unit sediment massGDGT-0/sedng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]GDGT-0 (1302), per dry mass
Monocyclic glycerol dibiphytanyl glycerol tetraetherGDGT-1ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]GDGT-1 (1300), per dry mass
Dicyclic glycerol dibiphytanyl glycerol tetraetherGDGT-2ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]GDGT-2 (1298), per dry mass
Tricyclic glycerol dibiphytanyl glycerol tetraetherGDGT-3ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]GDGT-3 (1296), per dry mass
CrenarchaeolCrenng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]per dry mass
Crenarchaeol regio-isomer, per unit sediment massCren'/sedng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]per dry mass
10 Branched glycerol dialkyl glycerol tetraether, IIIabrGDGT IIIang/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIIa (1050), per dry mass
11 Branched glycerol dialkyl glycerol tetraether, IIIa'brGDGT IIIa'ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIIa' (1050'), per dry mass
12 Branched glycerol dialkyl glycerol tetraether, IIIbbrGDGT IIIbng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIIb (1048), per dry mass
13 Branched glycerol dialkyl glycerol tetraether, IIIb'brGDGT IIIb'ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIIb' (1048'), per dry mass
14 Branched glycerol dialkyl glycerol tetraether, IIIcbrGDGT IIIcng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIIc (1046), per dry mass
15 Branched glycerol dialkyl glycerol tetraether, IIIc'brGDGT IIIc'ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIIc' (1046'), per dry mass
16 Branched glycerol dialkyl glycerol tetraether, IIabrGDGT IIang/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIa (1036), per dry mass
17 Branched glycerol dialkyl glycerol tetraether, IIa'brGDGT IIa'ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIa' (1036'), per dry mass
18 Branched glycerol dialkyl glycerol tetraether, IIbbrGDGT IIbng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIb (1034), per dry mass
19 Branched glycerol dialkyl glycerol tetraether, IIb'brGDGT IIb'ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIb' (1034'), per dry mass
20 Branched glycerol dialkyl glycerol tetraether, IIcbrGDGT IIcng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIc (1032), per dry mass
21 Branched glycerol dialkyl glycerol tetraether, IIc'brGDGT IIc'ng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT IIc' (1032'), per dry mass
22 Branched glycerol dialkyl glycerol tetraether, IabrGDGT Iang/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT Ia (1022), per dry mass
23 Branched glycerol dialkyl glycerol tetraether, IbbrGDGT Ibng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT Ib (1020), per dry mass
24 Branched glycerol dialkyl glycerol tetraether, IcbrGDGT Icng/gEngels, StefanInfinity ultra-high performance liquid chromatograph, Agilent 1260, coupled to a single quadrupole mass spectrometer, Agilent 6130 [following Hopmans et al. 2016]brGDGT Ic (1018), per dry mass
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1973 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Ord No

Depth sed [m]

Age [ka BP]

GDGT-0/sed [ng/g]

GDGT-1 [ng/g]

GDGT-2 [ng/g]

GDGT-3 [ng/g]

Cren [ng/g]

Cren'/sed [ng/g]
10 
brGDGT IIIa [ng/g]
11 
brGDGT IIIa' [ng/g]
12 
brGDGT IIIb [ng/g]
13 
brGDGT IIIb' [ng/g]
14 
brGDGT IIIc [ng/g]
15 
brGDGT IIIc' [ng/g]
16 
brGDGT IIa [ng/g]
17 
brGDGT IIa' [ng/g]
18 
brGDGT IIb [ng/g]
19 
brGDGT IIb' [ng/g]
20 
brGDGT IIc [ng/g]
21 
brGDGT IIc' [ng/g]
22 
brGDGT Ia [ng/g]
23 
brGDGT Ib [ng/g]
24 
brGDGT Ic [ng/g]
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