Citation:

PANGAEA.964230

Name: Seawater carbonate chemistry and otolith morphology in larvae of a tropical, epipelagic fish species, yellowfin tuna (Thunnus albacares)
Published: 2023-12-19
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Nekton; North Pacific; Pelagos; Single species; Thunnus albacares; Tropical

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Abstract:

To investigate the potential effects of increasing CO2 on otolith calcification of 9-day old pre-flexion stage yellowfin tuna (Thunnus albacares), an experiment was conducted at the Inter-American Tropical Tuna Commission's Achotines Laboratory in Panama during 2011. Fertilized eggs and larvae were exposed to mean pCO2 levels that ranged from present day (355 μatm) to two levels predicted to occur in some areas of the Pacific in the near future (2013 and 3321 μatm), and to an extreme value equivalent to long-term projections for 300 years in the future (9624 μatm).

Keyword(s):

Animalia; Chordata; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Growth/Morphology; Laboratory experiment; Nekton; North Pacific; Pelagos; Single species; Thunnus albacares; Tropical

Supplement to:

Wexler, Jeanne B; Margulies, Daniel; Scholey, Vernon; Lennert-Cody, Cleridy E; Bromhead, D; Nicol, Simon; Hoyle, S; Stein, Maria; Williamson, Jane E; Havenhand, Jonathan N (2023): The effect of ocean acidification on otolith morphology in larvae of a tropical, epipelagic fish species, yellowfin tuna (Thunnus albacares). Journal of Experimental Marine Biology and Ecology, 569, 151949, https://doi.org/10.1016/j.jembe.2023.151949

Documentation:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-12-18.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Wexler, Jeanne B
2	Species, unique identification	Species UID		Wexler, Jeanne B
3	Species, unique identification (URI)	Species UID (URI)		Wexler, Jeanne B
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Wexler, Jeanne B
5	Category	Cat		Wexler, Jeanne B
6	Larvae	Larvae		Wexler, Jeanne B
7	pH	pH		Wexler, Jeanne B		mean
8	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Wexler, Jeanne B		mean
9	Treatment: pH	T:pH		Wexler, Jeanne B
10	Identification	ID		Wexler, Jeanne B		tank
11	Length, standard	I std	mm	Wexler, Jeanne B
12	Otolith, diameter	Otolith diam	µm	Wexler, Jeanne B		difference
13	Otolith, diameter	Otolith diam	µm	Wexler, Jeanne B		mean
14	Otolith, diameter	Otolith diam	µm	Wexler, Jeanne B		Normalized by standard length (mm) of the larva
15	Otolith area	Otolith area	mm²	Wexler, Jeanne B		difference
16	Otolith area	Otolith area	mm²	Wexler, Jeanne B		mean
17	Otolith area	Otolith area	mm²	Wexler, Jeanne B		Normalized by standard length (mm) of the larva
18	Otolith perimeter	Otolith perim	mm	Wexler, Jeanne B		difference
19	Otolith perimeter	Otolith perim	mm	Wexler, Jeanne B		mean
20	Otolith perimeter	Otolith perim	mm	Wexler, Jeanne B		Normalized by standard length (mm) of the larva
21	Roundness	Roundness		Wexler, Jeanne B		difference
22	Roundness	Roundness		Wexler, Jeanne B		mean
23	Salinity	Sal		Wexler, Jeanne B
24	Salinity, standard deviation	Sal std dev	±	Wexler, Jeanne B
25	Temperature, water	Temp	°C	Wexler, Jeanne B
26	Temperature, water, standard deviation	Temp std dev	±	Wexler, Jeanne B
27	Alkalinity, total	AT	µmol/kg	Wexler, Jeanne B	Potentiometric titration
28	Alkalinity, total, standard deviation	AT std dev	±	Wexler, Jeanne B	Potentiometric titration
29	pH	pH		Wexler, Jeanne B	Potentiometric	NBS scale
30	pH, standard deviation	pH std dev	±	Wexler, Jeanne B	Potentiometric	NBS scale
31	Carbon, inorganic, dissolved	DIC	µmol/kg	Wexler, Jeanne B	Calculated using CO2SYS
32	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
33	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Wexler, Jeanne B	Calculated using CO2SYS
34	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
35	Carbon dioxide	CO2	µmol/kg	Wexler, Jeanne B	Calculated using CO2SYS
36	Carbon dioxide, standard deviation	CO2 std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
37	Bicarbonate ion	[HCO3]-	µmol/kg	Wexler, Jeanne B	Calculated using CO2SYS
38	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
39	Carbonate ion	[CO3]2-	µmol/kg	Wexler, Jeanne B	Calculated using CO2SYS
40	Carbonate ion, standard deviation	[CO3]2- std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
41	Calcite saturation state	Omega Cal		Wexler, Jeanne B	Calculated using CO2SYS
42	Calcite saturation state, standard deviation	Omega Cal std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
43	Aragonite saturation state	Omega Arg		Wexler, Jeanne B	Calculated using CO2SYS
44	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Wexler, Jeanne B	Calculated using CO2SYS
45	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
46	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
47	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
48	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
49	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
50	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
51	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
52	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
53	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
54	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

19804 data points

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