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Saidi, Amira; Banchi, Elisa; Fonti, Viviana; Manna, Vincenzo; De Vittor, Cinzia; Giani, Michele; Malfatti, Francesca; Celussi, Mauro (2023): Seawater carbonate chemistry and microbial dynamics in shallow CO2 seeps system off Panarea Island (Italy) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.964111

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Abstract:
Sampling was carried out between 28th and 31st July 2011 in the Panarea Island area along a 9-station transect. One extra station located north of the vent field was sampled as a reference (i.e., no ventinfluenced). At each station, temperature, salinity, oxygen, and pH vertical profiles were registered using a CTD SBE9 Seabird. Seawater was collected with 10 L Niskin bottles for determining pH, the concentrations of chlorophyll a, macronutrients, dissolved inorganic carbon, particulate organic carbon, and nitrogen concentrations, as well as prokaryotic abundance, the rates of heterotrophic carbon production and extracellular enzymatic activities, and to depict the prokaryotic community structure by 16S rRNA gene amplicon sequencing (at seven stations).
Keyword(s):
CO2 vent; Coast and continental shelf; Community composition and diversity; Entire community; Field observation; Mediterranean Sea; Other metabolic rates; Pelagos; Temperate
Supplement to:
Saidi, Amira; Banchi, Elisa; Fonti, Viviana; Manna, Vincenzo; De Vittor, Cinzia; Giani, Michele; Malfatti, Francesca; Celussi, Mauro (2023): Microbial dynamics in shallow CO2 seeps system off Panarea Island (Italy). Marine Biology, 170(8), 97, https://doi.org/10.1007/s00227-023-04247-8
Source:
De Vittor, Cinzia; Celussi, Mauro (2014): Exoenzymatic activities in the water column during URANIA cruise PaCO2. PANGAEA, https://doi.org/10.1594/PANGAEA.831926
De Vittor, Cinzia; Celussi, Mauro (2014): Heterotrophic carbon production of planktonic prokaryotes in the water column during URANIA cruise PaCO2. PANGAEA, https://doi.org/10.1594/PANGAEA.831925
De Vittor, Cinzia; Comici, Cinzia (2012): Physical oceanography during URANIA cruise PaCO2. PANGAEA, https://doi.org/10.1594/PANGAEA.804481
De Vittor, Cinzia; Comici, Cinzia; Giani, Michele (2013): Hydrochemistry measured on water bottle samples during URANIA cruise PaCO2. PANGAEA, https://doi.org/10.1594/PANGAEA.817482
De Vittor, Cinzia; Karuza, Ana; Fornasaro, Daniela; Monti, Marina (2014): Plankton abundance and diversity measured on water bottle samples during URANIA cruise PaCO2. PANGAEA, https://doi.org/10.1594/PANGAEA.831927
Documentation:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html
Funding:
Seventh Framework Programme (FP7), grant/award no. 265847: Sub-seabed CO2 Storage: Impact on Marine Ecosystems
Coverage:
Median Latitude: 38.645744 * Median Longitude: 15.107827 * South-bound Latitude: 38.621400 * West-bound Longitude: 15.056450 * North-bound Latitude: 38.718900 * East-bound Longitude: 15.132420
Date/Time Start: 2011-07-28T01:45:00 * Date/Time End: 2011-07-30T15:48:00
Minimum DEPTH, water: 1.0 m * Maximum DEPTH, water: 394.6 m
Event(s):
PaCO2-B1  * Latitude: 38.662480 * Longitude: 15.118860 * Date/Time: 2011-07-29T09:00:00 * Elevation: -15.0 m * Campaign: PaCO2 (U10/2011) * Basis: Urania * Method/Device: CTD/Rosette (CTD-RO)
PaCO2-B2  * Latitude: 38.663783 * Longitude: 15.118633 * Date/Time: 2011-07-29T09:30:00 * Elevation: -13.0 m * Campaign: PaCO2 (U10/2011) * Basis: Urania * Method/Device: CTD/Rosette (CTD-RO)
PaCO2-P0a (CTD1)  * Latitude: 38.718900 * Longitude: 15.056450 * Date/Time Start: 2011-07-28T01:45:00 * Date/Time End: 2011-07-28T01:55:00 * Elevation: -1558.0 m * Campaign: PaCO2 (U10/2011) * Basis: Urania * Method/Device: CTD/Rosette (CTD-RO) * Comment: 8 bottles fired from 0-50 m
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-12-13.
Abundance of prokaryotes (heterotrophs and phototrophs), nanoplankton (heterotrophs and phototrophs), microphytoplanktonic and microzooplanktonic abundance divided into major taxonomic groups. Detailed floristic and faunistic lists on request. Measure of degradation processes by exoenzymatic prokaryotic activities (beta-glucosidase, phosphatase and lipase).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
Event labelEventDe Vittor, Cinzia
Date/Time of eventDate/TimeDe Vittor, Cinzia
Latitude of eventLatitudeDe Vittor, Cinzia
Longitude of eventLongitudeDe Vittor, Cinzia
Elevation of eventElevationmDe Vittor, Cinzia
Type of studyStudy typeDe Vittor, Cinzia
DEPTH, waterDepth watermDe Vittor, CinziaGeocode
Viral abundanceVirus#/mlDe Vittor, CinziaEpifluorescence microscopy
Prokaryotes, heterotrophProk het#/mlDe Vittor, CinziaEpifluorescence microscopy
10 Prokaryotes, autotrophProk auto#/mlDe Vittor, CinziaEpifluorescence microscopy
11 Nanoplankton, phototrophicNanopl photo#/mlDe Vittor, CinziaMicroscopy
12 Nanoplankton, heterotrophicNanopl het#/mlDe Vittor, CinziaMicroscopy
13 MicrozooplanktonMicrozoopl#/lDe Vittor, CinziaMicroscopy
14 DinoflagellatesDinofl#/lDe Vittor, CinziaMicroscopy
15 Ciliates, aloricateCiliates alor#/lDe Vittor, CinziaMicroscopy
16 TintinnidTint#/lDe Vittor, CinziaMicroscopy
17 MetazoaMetazoa#/lDe Vittor, CinziaMicroscopy
18 Microzooplankton, otherMicrozoopl oth#/lDe Vittor, CinziaMicroscopy
19 PhytoplanktonPhytopl#/lDe Vittor, CinziaMicroscopy
20 BacillariophyceaeBacillariophyceae#/lDe Vittor, CinziaMicroscopy
21 DinophyceaeDinophyceae#/lDe Vittor, CinziaMicroscopy
22 CoccolithophoridaeCoccolith#/lDe Vittor, CinziaMicroscopy
23 PhytoflagellatePhytoflagellate#/lDe Vittor, CinziaMicroscopy
24 Prokaryotes, productionProk prodµg/l/dayDe Vittor, CinziaIncorporation of radioactive label (Smith and Azam, 1992)
25 beta-glucosidase activityMUF-bgluµmol/l/hDe Vittor, CinziaSpectrofluorometry
26 Phosphatase activityMUF-Phosµmol/l/hDe Vittor, CinziaSpectrofluorometry
27 Leucine aminopeptidase activityLeu aminopepnmol/l/hDe Vittor, CinziaSpectrofluorometry
28 OxygenO2µmol/lDe Vittor, CinziaTitration, Winkler
29 Nitrogen, organic, particulatePONµg/lDe Vittor, CinziaElement analyser CHNSO, Costech ECS 4010
30 Carbon, organic, particulatePOCµg/lDe Vittor, CinziaElement analyser CHNSO, Costech ECS 4010
31 pHpHDe Vittor, CinziaSpectrophotometrictotal scale
32 Alkalinity, totalATµmol/kgDe Vittor, CinziaPotentiometric titration
33 Chlorophyll aChl aµg/lDe Vittor, CinziaSpectrophotometry
34 PhaeopigmentsPhaeµg/lDe Vittor, CinziaSpectrophotometry
35 Carbon, inorganic, dissolvedDICµmol/lDe Vittor, CinziaInfrared spectrometry (Shimadzu TOC-V)
36 Carbon, organic, dissolvedDOCµmol/lDe Vittor, CinziaInfrared spectrometry (Shimadzu TOC-V)
37 Ammonium[NH4]+µmol/lDe Vittor, CinziaNutrient autoanalyzer (Bran and Luebbe, AAIII)
38 Nitrite[NO2]-µmol/lDe Vittor, CinziaNutrient autoanalyzer (Bran and Luebbe, AAIII)
39 Nitrate[NO3]-µmol/lDe Vittor, CinziaNutrient autoanalyzer (Bran and Luebbe, AAIII)
40 Phosphate[PO4]3-µmol/lDe Vittor, CinziaNutrient autoanalyzer (Bran and Luebbe, AAIII)
41 Silicon dioxideSiO2µmol/lDe Vittor, CinziaNutrient autoanalyzer (Bran and Luebbe, AAIII)
42 Temperature, waterTemp°CDe Vittor, CinziaCTD, Sea-Bird, SBE 9
43 SalinitySalDe Vittor, CinziaCTD, Sea-Bird, SBE 9
44 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
45 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
46 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
47 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
48 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1452 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Event

Date/Time

Latitude

Longitude

Elevation [m]

Study type

Depth water [m]

Virus [#/ml]

Prok het [#/ml]
10 
Prok auto [#/ml]
11 
Nanopl photo [#/ml]
12 
Nanopl het [#/ml]
13 
Microzoopl [#/l]
14 
Dinofl [#/l]
15 
Ciliates alor [#/l]
16 
Tint [#/l]
17 
Metazoa [#/l]
18 
Microzoopl oth [#/l]
19 
Phytopl [#/l]
20 
Bacillariophyceae [#/l]
21 
Dinophyceae [#/l]
22 
Coccolith [#/l]
23 
Phytoflagellate [#/l]
24 
Prok prod [µg/l/day]
25 
MUF-bglu [µmol/l/h]
26 
MUF-Phos [µmol/l/h]
27 
Leu aminopep [nmol/l/h]
28 
O2 [µmol/l]
29 
PON [µg/l]
30 
POC [µg/l]
31 
pH
32 
AT [µmol/kg]
33 
Chl a [µg/l]
34 
Phae [µg/l]
35 
DIC [µmol/l]
36 
DOC [µmol/l]
37 
[NH4]+ [µmol/l]
38 
[NO2]- [µmol/l]
39 
[NO3]- [µmol/l]
40 
[PO4]3- [µmol/l]
41 
SiO2 [µmol/l]
42 
Temp [°C]
43 
Sal
44 
CSC flag
45 
CO2 [µmol/kg]
46 
fCO2water_SST_wet [µatm]
47 
pCO2water_SST_wet [µatm]
48 
[HCO3]- [µmol/kg]
49 
[CO3]2- [µmol/kg]
50 
DIC [µmol/kg]
51 
Omega Arg
52 
Omega Cal
PaCO2-P0a 2011-07-28T01:45:0038.718915.0564-1558field1.552100750705211870163.0649.58260.2249.10.02.68.50.0337471059121113267121.1520.003040.010464.122077.3160.3225230.0420.0422768830.860.030.070.061.4426.09037.880
PaCO2-P0a2011-07-28T01:45:0038.718915.0564-1558field50.182198228652446023373.7281.0958.07.06.038.07.00.0597272022321657367291.0850.000820.012108.372618.6661.8125020.1580.2282788551.120.030.120.071.0915.67037.820
PaCO2-P15 2011-07-29T06:41:0038.658915.1324-393field3.011629634419267991436.2961.707.21.62.42.40.80.0322031028731680276400.8010.001660.0043315.352129.4554.758.10425120.0400.03427631010.780.010.170.031.2825.92737.87789.76357.05358.181833.10277.832120.694.336.53
PaCO2-P152011-07-29T06:41:0038.658915.1324-393field44.212893382168102378372.3972.7223.00.00.820.20.81.2545891017654196367291.1370.000000.003589.4326611.6785.648.01924930.1170.14627640.880.010.110.021.0616.11037.896816.27456.37458.012054.39177.972248.632.674.13
PaCO2-P152011-07-29T06:41:0038.658915.1324-393field80.423810.7858.0425172818650.770.030.300.021.1514.52237.955
PaCO2-P152011-07-29T06:41:0038.658915.1324-393field120.12380501534752215190.1490.000000.010150.002044.4918.6325622884570.780.014.030.143.3914.24838.280
PaCO2-P152011-07-29T06:41:0038.658915.1324-393field250.41863.1217.877.99925920.3521.0272899541.020.016.250.256.2414.19838.685818.33487.54489.332168.44171.912358.682.473.82
PaCO2-P152011-07-29T06:41:0038.658915.1324-393field394.63.00.00.02.00.01.0785838034117607437790.0570.000000.007770.001842.6617.477.99526100.0300.1442905460.850.026.460.287.0314.14538.736818.38488.23490.022183.59173.052375.022.433.75
PaCO2-P19 2011-07-29T10:54:0038.648815.1200-70field3.0118622255489916432258.5551.4227.09.05.07.05.01.095086110358671975571340.6710.000650.0024728.662094.4533.018.12025200.0410.0391848710.830.000.070.021.3326.12337.92589.28341.36342.441816.46287.992113.734.496.77
PaCO2-P192011-07-29T10:54:0038.648815.1200-70field19.8571.15162.1845.00.05.030.06.04.00.8750.000220.0036219.802365.1037.8425150.0560.0512528640.920.010.190.031.3225.09738.572
PaCO2-P192011-07-29T10:54:0038.648815.1200-70field45.23851733101720512105239.74119.8790.00.017.062.09.02.01.1120.000000.0029219.5526610.8976.948.11224980.1550.1462509760.870.010.260.031.0616.21937.891812.59354.19355.461973.91212.712199.203.194.93
PaCO2-P192011-07-29T10:54:0038.648815.1200-70field63.0197238551834918149414.26211.5442.016.42.419.24.00.0254702054152041179940.3000.004160.0102511.432388.6259.068.04925020.2380.39428021000.820.020.290.020.9515.00637.799815.54421.56423.082052.15182.462250.152.724.22
PaCO2-P23 2011-07-29T16:18:0038.645915.1178-60field3.0496.52182.1640.010.04.022.03.01.0126736305024910764470.8130.001320.0062916.652096.0645.148.12525150.0460.0222544610.990.010.160.021.3226.12737.89889.13335.73336.791807.05289.692105.874.526.81
PaCO2-P232011-07-29T16:18:0038.645915.1178-60field30.30.4160.001030.0115117.952658.7565.788.09124950.0800.0642543630.860.000.170.021.1018.04637.674812.67375.37376.681966.16215.172194.003.255.01
PaCO2-P232011-07-29T16:18:0038.645915.1178-60field53.1699173311474578697252.08135.7485.70.81.777.35.90.0572857020436421363580.2390.001360.0108017.002618.4264.137.91824980.1230.1942749680.850.010.070.011.2215.52737.749821.72598.27600.422144.22143.592309.542.153.33
PaCO2-P232011-07-29T16:18:0038.645915.1178-60field61.0320047413118224603220.35111.0662.417.45.529.49.20.8151972016251494120580.6610.000520.0064534.0724910.9360.417.62425020.1900.50529150.850.020.370.051.1414.96737.814846.641263.471268.062311.8177.152435.601.151.78
PaCO2-P25 2011-07-29T18:51:0038.643515.1156-51field3.5293066715304595975479.48229.165860350195881113378521.2380.000450.0046327.852116.4646.108.12225110.0370.0292614690.910.010.170.021.2326.06337.89589.21338.24339.311808.75287.282105.244.486.75
PaCO2-P252011-07-29T18:51:0038.643515.1156-51field27.8110714164129114690511.21218.5979.02.05.068.04.00.0776802023258607537950.7770.000030.0094320.232689.2373.858.06924910.0690.0722556650.840.010.050.021.2119.45337.794812.88397.49398.851961.26215.682189.833.275.03
PaCO2-P252011-07-29T18:51:0038.643515.1156-51field47.1190725964129121075285.97162.5761.211.46.632.011.20.015423202232557126140.5120.000220.0068813.572659.1373.177.93624950.0950.15026131020.730.020.020.021.1315.58837.682820.68570.45572.502128.75148.662298.102.233.45
PaCO2-P26 2011-07-29T21:09:0038.630715.0998-53field3.529818375382862925356.97180.691397833062886792760751.2300.000000.0072811.982117.9554.468.13525140.0480.0392684890.830.020.020.001.2825.81437.90188.94326.25327.291800.22291.992101.154.556.86
PaCO2-P262011-07-29T21:09:0038.630715.0998-53field29.8144207417830628814364.31182.1674.85.00.064.73.41.7498565015437236341331.5900.000090.0094211.102668.1960.458.11624880.0760.08126770.800.010.070.011.0118.77138.103811.46347.50348.701919.82230.842162.123.495.36
PaCO2-P262011-07-29T21:09:0038.630715.0998-53field51.625393308439799891319.2684.2254.012.02.032.08.00.01057060661433395570.8440.001260.0060517.332658.1767.928.05124310.1200.1352732990.870.010.110.041.2816.03537.626814.60407.83409.291978.12182.972175.682.744.25
PaCO2-P30 2011-07-30T08:09:0038.641515.1118-26field3.0234453386834613515232.9457.9247.09.04.023.09.02.040139113391401113287531.0150.001020.0060814.852045.7241.458.10925160.0500.04125801011.030.020.130.031.2925.87637.89789.64352.46353.581831.07280.332121.054.376.59
PaCO2-P302011-07-30T08:09:0038.641515.1118-26field11.9241896367480918725374.60101.3671.00.01.056.014.00.02588010035202597196630.7230.003010.0079420.572076.9645.2125150.0320.03225711.030.020.130.001.0825.69537.910
PaCO2-P302011-07-30T08:09:0038.641515.1118-26field20.85079822102650989021.8090.001910.0107619.992396.0644.988.10124940.0470.0482693610.940.020.310.021.4621.59537.662811.09362.61363.821899.01242.772152.873.725.68
PaCO2-P31a 2011-07-30T09:48:0038.628015.0961-71field3.54996089130872110577407.65147.64110.01.05.086.014.04.08273950245672843552791.5650.001130.0093722.672075.6344.918.14625190.0260.0222554840.981.260.001.1725.76337.91588.68316.48317.491791.65297.582097.924.646.99
PaCO2-P31a2011-07-30T09:48:0038.628015.0961-71field54.6232592671161118803315.10158.6541.04.02.032.03.00.0210521043372236144690.5890.002520.0076613.8625610.7079.748.00625040.2160.3762651740.990.020.120.001.1415.43237.735817.28474.57476.282084.55170.302272.132.553.95
PaCO2-P31a2011-07-30T09:48:0038.628015.0961-71field68.038238227139213777390.02114.58589390225511514348741.1160.001460.0069918.132488.6263.517.92225060.2870.7112700841.000.010.090.091.6814.98537.779821.86592.40594.542153.94142.822318.622.133.30
PaCO2-P33 2011-07-30T13:13:0038.621415.0874-77field3.5438204410373638902326.12138.8282.00.06.063.09.04.06580270204111543437781.3500.000570.0051518.652105.2641.438.13225400.0270.0382686930.790.010.270.011.4425.95437.89189.08332.56333.611820.93294.762124.774.606.93
PaCO2-P332011-07-30T13:13:0038.621415.0874-77field41.2148700764893311534243.27102.2436.00.08.020.04.04.0233298030291484187361.2390.003090.0185115.542638.4864.648.08225140.1230.1162747741.100.021.280.051.0516.30037.857813.75387.71389.092014.53203.022231.303.054.71
PaCO2-P332011-07-30T13:13:0038.621415.0874-77field73.4321326771173373980.7180.002840.0311920.1124213.0872.408.06025210.3581.12726270.910.030.120.011.0514.59937.870815.36411.70413.202063.55185.672264.582.764.28
PaCO2-P35 2011-07-30T15:42:0038.639015.1047-26field2.527725048280308541264.42195.8720.81.63.211.24.00.8247827057813720152111.2590.001050.0177418.902089.9846.158.12525290.0390.03726880.790.020.061.281.4026.19137.90989.16337.38338.451815.25291.742116.154.556.86
PaCO2-P352011-07-30T15:42:0038.639015.1047-26field17.4190842255600715753175.0265.48312551052741670243010.7740.000000.0035913.92223251728870.860.020.101.281.9024.70738.646
PaCO2-P352011-07-30T15:42:0038.639015.1047-26field19.8172118538377816394186.0764.8820.75.90.09.65.20.0285522027372051237440.2460.000000.0086513.882457.45725162992750.910.020.061.282.8421.17338.102860.811970.341976.962349.2467.742477.791.031.58
PaCO2-P352011-07-30T15:42:0038.639015.1047-26field22.8173979343528013397319.51174.08165711024621299128000.3630.000000.0042016.532346.9641.247.88225180.0380.0743313940.870.010.130.001.9921.45837.015820.70671.94674.192125.47161.022307.182.483.78
PaCO2-B1 2011-07-29T09:00:0038.662515.1189-15field1.0179096348179924239230.93128.6814.85.20.05.93.00.7457543041702227393270.1860.000000.0009810.9721113.78110.978.09625230.0510.04327630.870.010.070.021.40
PaCO2-B12011-07-29T09:00:0038.662515.1189-15field13.021313.82107.078.10225150.0550.0432755660.940.010.070.021.35
PaCO2-B2 2011-07-29T09:30:0038.663815.1186-13field1.02138.8160.84251327571150.970.000.070.021.27
PaCO2-B22011-07-29T09:30:0038.663815.1186-13field13.021414.39133.558.08025150.0750.0612748670.670.020.000.021.39