Citation:

PANGAEA.963864

Name: Seawater carbonate chemistry and coral physiology in 22-month mesocosm experiment
Published: 2023-11-30
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Behaviour; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Laboratory experiment; Montipora capitata; Mortality/Survival; North Pacific; Porites compressa; Porites lobata; Primary production/Photosynthesis; Respiration; Rocky-shore community; Single species; Temperature; Tropical

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Abstract:

This dataset includes physiological parameters of three Hawaiian coral species (Porites compressa, Porites lobata, and Montipora capitata) over 22-month mesocosm experiment. The corals were exposed to one of four treatments: control, ocean acidification, ocean warming, or combined future ocean conditions.

Keyword(s):

Animalia; Behaviour; Benthic animals; Benthos; Biomass/Abundance/Elemental composition; Calcification/Dissolution; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or < 1 m**2); Entire community; Laboratory experiment; Montipora capitata; Mortality/Survival; North Pacific; Porites compressa; Porites lobata; Primary production/Photosynthesis; Respiration; Rocky-shore community; Single species; Temperature; Tropical

Supplement to:

Price, James T; McLachlan, Rowan H; Jury, Christopher P; Toonen, Robert J; Wilkins, Michael J; Grottoli, Andréa G (2023): Long-term coral microbial community acclimatization is associated with coral survival in a changing climate. PLoS ONE, 18(9), e0291503, https://doi.org/10.1371/journal.pone.0291503

Source:

Grottoli, Andréa G (2022): Physiological parameters of three corals species collected from Hawaii and exposed to four treatment conditions for 22-months as part of a mesocosm experiment. Biological and Chemical Oceanography Data Management Office (BCO-DMO), https://doi.org/10.26008/1912/BCO-DMO.849259.1

Documentation:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Median Latitude: 21.451320 * Median Longitude: -157.841538 * South-bound Latitude: 21.326290 * West-bound Longitude: -158.110340 * North-bound Latitude: 21.592520 * East-bound Longitude: -157.674600

Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00

Event(s):

Haleiwa * Latitude: 21.592520 * Longitude: -158.110340 * Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00 * Method/Device: Experiment (EXP)

MokuoLoe_OA * Latitude: 21.434170 * Longitude: -157.786340 * Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00 * Method/Device: Experiment (EXP)

Sampan_Channel * Latitude: 21.452300 * Longitude: -157.794870 * Date/Time Start: 2015-08-17T00:00:00 * Date/Time End: 2015-11-13T00:00:00 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-10-17.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Price, James T
2	Identification	ID		Price, James T		coral fragment
3	Species, unique identification	Species UID		Price, James T
4	Species, unique identification (URI)	Species UID (URI)		Price, James T
5	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Price, James T
6	Site	Site		Price, James T		collection
7	Identification	ID		Price, James T		genet
8	Identification	ID		Price, James T		ramet
9	Identification	ID		Price, James T		tank
10	Identification	ID		Price, James T		head tank
11	Treatment	Treat		Price, James T		temperature
12	Treatment	Treat		Price, James T		pCO2
13	Code	Code		Price, James T		1 = fragment had >40% living tissue at end of experiment; 0 = fragment had < 40% living tissue at end.
14	Biomass	Biom	mg/cm²	Price, James T
15	Lipid content	Lipids	mg/cm²	Price, James T
16	Lipids, per unit dry mass	Lipid/dm	mg/g	Price, James T
17	Lipids	Lipids	kJ/g	Price, James T		per dry mass
18	Protein per surface area	Protein	mg/cm²	Price, James T		total soluble
19	Proteins, per unit dry mass	Protein/dm	mg/g	Price, James T		total soluble
20	Proteins	Protein	kJ/g	Price, James T		total soluble
21	Symbiodiniaceae	Symbiodiniaceae	#/cm²	Price, James T
22	Symbiodiniaceae, per dry mass	Symbiodiniaceae/dm	#/g	Price, James T
23	Whiteness	Whiteness	%	Price, James T
24	Carbon, organic, total, flux	TOC flux	µmol/cm²/h	Price, James T
25	Carbon, organic, total, per dry mass, flux	TOC/dm flux	µmol/g/h	Price, James T
26	Net photosynthesis rate, oxygen	PN O2	µmol/cm²/h	Price, James T
27	Net photosynthesis rate, oxygen	PN O2	µmol/g/h	Price, James T
28	Gross photosynthesis rate, oxygen	PG O2	µmol/cm²/h	Price, James T
29	Gross photosynthesis rate, oxygen	PG O2	µmol/g/h	Price, James T
30	Respiration rate, oxygen	Resp O2	µmol/cm²/h	Price, James T		day
31	Respiration rate, oxygen	Resp O2	µmol/g/h	Price, James T		day
32	Respiration rate, oxygen	Resp O2	µmol/cm²/h	Price, James T		night
33	Respiration rate, oxygen	Resp O2	µmol/g/h	Price, James T		night
34	Respiration rate, oxygen	Resp O2	µmol/cm²/h	Price, James T		total
35	Respiration rate, oxygen	Resp O2	µmol/g/h	Price, James T		total
36	Feeding rate	Feed rate	#/cm²/min	Price, James T
37	Feeding rate	Feed rate	#/g/min	Price, James T
38	Calcification rate of calcium carbonate	Calc rate CaCO3	mg/g/day	Price, James T
39	Contribution	Contribution	%	Price, James T		Zooxanthellae (i.e., Symbiodiniaceae) to Animal Respiration
40	Contribution	Contribution	%	Price, James T		Heterotrophy from TOC to Animal Respiration
41	Contribution	Contribution	%	Price, James T		Total acquired fixed carbon relative to Animal Respiration, i.e. CZAR + CHAR TOC
42	Salinity	Sal		Price, James T
43	Salinity, standard deviation	Sal std dev	±	Price, James T
44	Temperature, water	Temp	°C	Price, James T
45	Temperature, water, standard deviation	Temp std dev	±	Price, James T
46	pH	pH		Price, James T	Spectrophotometric	total scale
47	pH, standard deviation	pH std dev	±	Price, James T	Spectrophotometric	total scale
48	Alkalinity, total	AT	µmol/kg	Price, James T	Potentiometric titration
49	Alkalinity, total, standard deviation	AT std dev	±	Price, James T	Potentiometric titration
50	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Price, James T	Calculated using CO2SYS
51	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Price, James T	Calculated using CO2SYS
52	Aragonite saturation state	Omega Arg		Price, James T	Calculated using CO2SYS
53	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Price, James T	Calculated using CO2SYS
54	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
55	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
56	Carbon dioxide, standard deviation	CO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
57	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
58	Fugacity of carbon dioxide in seawater, standard deviation	fCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
59	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
61	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
62	Bicarbonate ion, standard deviation	[HCO3]- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
63	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
64	Carbonate ion, standard deviation	[CO3]2- std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
65	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
66	Carbon, inorganic, dissolved, standard deviation	DIC std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
67	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
68	Aragonite saturation state, standard deviation	Omega Arg std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)
69	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
70	Calcite saturation state, standard deviation	Omega Cal std dev	±	Yang, Yan	Calculated using seacarb after Orr et al. (2018)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

16188 data points

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