Citation:

PANGAEA.963862

Name: Seawater carbonate chemistry and growth and reproduction of three-spined Stickleback (Gasterosteus aculeatus)
Published: 2023-11-30
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Chordata; Containers and aquaria (20-1000 L or < 1 m**2); Gasterosteus aculeatus; Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; Laboratory strains; Mortality/Survival; Nekton; Not applicable; Other studied parameter or process; Pelagos; Reproduction; Single species; Temperature

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Abstract:

We investigated the joint effect of warming and acidification on three-spined stickleback (Gasterosteus aculeatus) from the juvenile stage to adulthood, focusing on parameters linked to growth, sexual maturation, and reproduction. Juvenile sticklebacks were split in 2 climate scenarios: a "Current" scenario corresponding to the current seasonal physico-chemical parameters of the water of the "Rade de Brest" in France, and a "RCP8.5" scenario with a warming of 3 °C and an acidification of 0.4 pH units.

Keyword(s):

Animalia; Chordata; Containers and aquaria (20-1000 L or < 1 m**2); Gasterosteus aculeatus; Gene expression (incl. proteomics); Growth/Morphology; Laboratory experiment; Laboratory strains; Mortality/Survival; Nekton; Not applicable; Other studied parameter or process; Pelagos; Reproduction; Single species; Temperature

Supplement to:

Devergne, Jimmy; Loizeau, Véronique; Lebigre, Christophe; Bado-Nilles, Anne; Collet, Sophie; Mouchel, Olivier; Iaria, Ugo; Le Gall, Marie-Madeleine; Madec, Lauriane; Turiès, Cyril; Servili, Arianna (2023): Impacts of Long-Term Exposure to Ocean Acidification and Warming on Three-Spined Stickleback (Gasterosteus aculeatus) Growth and Reproduction. Fishes, 8(10), 523, https://doi.org/10.3390/fishes8100523

Documentation:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-10-30.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Devergne, Jimmy
2	Species, unique identification	Species UID		Devergne, Jimmy
3	Species, unique identification (URI)	Species UID (URI)		Devergne, Jimmy
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Devergne, Jimmy
5	Date	Date		Devergne, Jimmy
6	Month	Month		Devergne, Jimmy
7	Scenario	Scenario		Devergne, Jimmy
8	Day of experiment	DOE	day	Devergne, Jimmy
9	Individuals	Ind	#	Devergne, Jimmy		death
10	Individuals	Ind	#	Devergne, Jimmy		effectif
11	Mass	Mass	mg	Devergne, Jimmy
12	Length	l	mm	Devergne, Jimmy
13	Sex	Sex		Devergne, Jimmy
14	Liver, mass	Liver m	g	Devergne, Jimmy
15	Mass	Mass	mg	Devergne, Jimmy		kidney
16	Gonad, mass	Gon m	g	Devergne, Jimmy
17	Fulton's condition factor	K		Devergne, Jimmy
18	Fulton's condition factor	K		Devergne, Jimmy		corrected from the mass of the gonads
19	Gonadosomatic index	GSI		Devergne, Jimmy
20	Hepatosomatic index	HSI		Devergne, Jimmy
21	Kidney-somatic index	KSI		Devergne, Jimmy
22	Lipid, total, per mass of muscle tissue	Lipid tot/muscle tis	%	Devergne, Jimmy
23	Gene name	Gene		Devergne, Jimmy
24	Gene expression, fold change, relative	Gene expression		Devergne, Jimmy
25	Identification	ID		Devergne, Jimmy		observer
26	Number	n	#	Devergne, Jimmy		Oocyte, slide
27	Number	n	#	Devergne, Jimmy		Oocyte, early
28	Number	n	#	Devergne, Jimmy		Oocyte, mid
29	Number	n	#	Devergne, Jimmy		Oocyte, late
30	Number	n	#	Devergne, Jimmy		Oocyte, mature
31	Number	n	#	Devergne, Jimmy		Oocyte, regression
32	Number	n	#	Devergne, Jimmy		Tubules, slide
33	Number	n	#	Devergne, Jimmy		Tubules, early
34	Number	n	#	Devergne, Jimmy		Tubules, mid
35	Number	n	#	Devergne, Jimmy		Tubules, late
36	Number	n	#	Devergne, Jimmy		Tubules, mature
37	Number	n	#	Devergne, Jimmy		Tubules, spawning
38	Name	Name		Devergne, Jimmy		hormones
39	Hormones	Hormones	ng/l	Devergne, Jimmy
40	Fertilization success rate	Fert success	%	Devergne, Jimmy
41	Eggs	Eggs	#	Devergne, Jimmy
42	Time in days	Time	days	Devergne, Jimmy		post fertilisation
43	Fish, egg, diameter	Fish egg diam	mm	Devergne, Jimmy
44	Perivitellin index	Perivitellin I	%	Devergne, Jimmy
45	Identification	ID		Devergne, Jimmy
46	Sperm concentration	Sperm	#/µl	Devergne, Jimmy
47	Mortality	Mortality	%	Devergne, Jimmy		sperm
48	Oxygen	O	%	Devergne, Jimmy
49	Salinity	Sal		Devergne, Jimmy
50	Temperature, water	Temp	°C	Devergne, Jimmy
51	Pressure, water	Press	dbar	Devergne, Jimmy
52	Alkalinity, total	AT	µmol/kg	Devergne, Jimmy
53	pH	pH		Devergne, Jimmy		NBS scale
54	pH	pH		Devergne, Jimmy		total scale
55	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Devergne, Jimmy
56	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
57	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
58	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
59	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
60	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
61	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
62	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
63	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
64	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
65	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

17393 data points

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