Sachs, Maria; Dünn, Manon (2023): Environmental data related to amplicon sequencing of benthic heterotrophic protists of the southern Baltic Sea, in 2020-2022 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.961784
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Published: 2023-09-12 • DOI registered: 2023-10-11
Abstract:
We aimed to explore the community compostion of benthic heterotrophic protists in three different regions of the southern Baltic Sea - Fehmarnbelt, Oderbank and Roennebank. Sediment samples where collected with a multicorer system and sliced into layered depth profile during three cruises in 2020, 2021 and 2022 with research vessels Elisabeth Mann Borgese (2020, EMB238 and 2021, EMB267) and Alkor (2022, AL570). We performed a paired-end NovaSeq sequencing (2 × 150 bp) run of the amplified V9 region of the 18S rDNA. This dataset includes the environmental data related to the sequencing study including sample IDs, region, sediment depth, station data, salinity and median grain size.
Supplement to:
Sachs, Maria; Dünn, Manon; Arndt, Hartmut (2023): Benthic Heterotrophic Protist Communities of the Southern Baltic Analyzed with the Help of Curated Metabarcoding Studies. Biology, 12(7), 1010, https://doi.org/10.3390/biology12071010
Related to:
Sachs, Maria; Dünn, Manon (2023): Amplicon sequence variant table of benthic heterotrophic protists of the southern Baltic Sea sampled in 2020-2022 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.961796
Project(s):
Funding:
Federal Ministry of Education and Research (BMBF), grant/award no. 03F0848D: DAM sustainMare - MGF Baltic Sea, University of Cologne
Coverage:
Median Latitude: 54.452870 * Median Longitude: 12.593818 * South-bound Latitude: 54.248971 * West-bound Longitude: 10.686013 * North-bound Latitude: 54.773210 * East-bound Longitude: 14.332776
Date/Time Start: 2020-05-27T12:11:00 * Date/Time End: 2022-04-03T14:10:24
Minimum DEPTH, sediment/rock: 0.005 m * Maximum DEPTH, sediment/rock: 0.175 m
Event(s):
AL570_75-1 * Latitude: 54.760610 * Longitude: 13.997050 * Date/Time: 2022-04-03T11:05:50 * Elevation: -38.0 m * Location: Baltic Sea * Campaign: AL570 * Basis: Alkor (1990) * Method/Device: MultiCorer (MUC) * Comment: BoKo
AL570_78-1 * Latitude: 54.773210 * Longitude: 14.015560 * Date/Time: 2022-04-03T14:10:24 * Elevation: -38.0 m * Location: Baltic Sea * Campaign: AL570 * Basis: Alkor (1990) * Method/Device: MultiCorer (MUC)
EMB238_2-4 * Latitude: 54.556067 * Longitude: 10.758716 * Date/Time: 2020-05-27T12:11:00 * Elevation: -20.4 m * Location: Baltic Sea * Campaign: EMB238 (MPA-DAM 2020 A) * Basis: Elisabeth Mann Borgese * Method/Device: MultiCorer (MUC)
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Sachs, Maria | |||
| 2 | Optional event label | Event 2 | Sachs, Maria | |||
| 3 | Sample ID | Sample ID | Sachs, Maria | |||
| 4 | Area/locality | Area | Sachs, Maria | |||
| 5 | DEPTH, sediment/rock | Depth sed | m | Sachs, Maria | Geocode | |
| 6 | Depth, sediment/rock, top/minimum | Depth sed top | m | Sachs, Maria | ||
| 7 | Depth, sediment/rock, bottom/maximum | Depth sed bot | m | Sachs, Maria | ||
| 8 | Latitude of event | Latitude | Sachs, Maria | |||
| 9 | Longitude of event | Longitude | Sachs, Maria | |||
| 10 | Date/Time of event | Date/Time | Sachs, Maria | |||
| 11 | Salinity | Sal | Sachs, Maria | Thermosalinograph (TSG) | psu | |
| 12 | Median, grain size | D50 | µm | Sachs, Maria | Calculated | |
| 13 | Elevation of event | Elevation | m | Sachs, Maria | ||
| 14 | Device type | Device | Sachs, Maria | |||
| 15 | Cruise/expedition | Expedition | Sachs, Maria |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1103 data points