Citation:

PANGAEA.961727

Name: Metabolomics reprogramming of the northern shrimp exposed to combined ocean change drivers
Published: 2023-09-18
License: https://creativecommons.org/licenses/by/4.0/
Keywords: crustacean; global change; immunity; metabolomics; multipopulations; Pandalus borealis; stress

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Abstract:

The dataset contains information on the metabolomics reprogramming of the northern shrimp Pandalus borealis collected from four distinct geographic origins (i.e. St. Lawrence Estuary (SLE) 48° 35' N, 68° 35' W, May 2018 ; Eastern Scotian Shelf (ESS), 45° 23' N, 61° 04' W, February 2019 ; Esquiman Channel (EC), 50° 44' N, 57°29' W, July 2019 ; and Northeast Newfoundland Coast (NNC), 50° 18' N, 54° 16' W, November 2019) and exposed for 30 days under laboratory conditions to different ocean global change scenarios of temperature (2, 6, and 10 °C) and pH (7.75 and 7.40), in isolation and in combination. The dataset contains the concentration of key metabolites linked to the aerobic and anaerobic metabolism, expressed as ng metabolite per mg wet weight. Metabolite extraction, identification and quantification was carried out on shrimp muscle tissue by Les laboratoires Iso-BioKem Inc. in February/March 2021.

Keyword(s):

crustacean; global change; immunity; metabolomics; multipopulations; Pandalus borealis; stress

References:

Guscelli, Ella; Chabot, Denis; Vermandele, Fanny; Madeira, Diana; Calosi, Piero (2023): All roads lead to Rome: inter-origin variation in metabolomics reprogramming of the northern shrimp exposed to global changes leads to a comparable physiological status. Frontiers in Marine Science, 10, 1170451, https://doi.org/10.3389/fmars.2023.1170451

Project(s):

Vulnerability of Northern Shrimp Populations to Climate and Global Changes Along the East Coast of Canada - From Natural Resource to Coastal Communities (554023)

Funding:

Fonds de recherche du Québec, grant/award no. 274427: Doctoral Training Scholarship

Fonds de recherche du Québec, grant/award no. 289597: Merit Scholarship for Foreign Students (PBEEE) program

Fundação para a Ciência e Tecnologia (FCT), grant/award no. CEECIND/01250/2018: Scientific Employment Stimulus researcher contract

Fundação para a Ciência e Tecnologia (FCT), grant/award no. LA/P/0094/2020 : Centro de Estudos do Ambiente e do Mar (CESAM)

Fundação para a Ciência e Tecnologia (FCT), grant/award no. UIDP/50017/2020 : CESAM - Centro de Estudos do Ambiente e do Mar

Government of Canada, grant/award no. 433956 : Vanier Canada Graduate Scholarship

Natural Sciences and Engineering Research Council (NSERC), grant/award no. RGPIN-2015-06500 : Discovery Grants Program - Individual

Natural Sciences and Engineering Research Council (NSERC), grant/award no. RGPIN-2020-05627 : Research Support for New Academics (FRQNT)

Coverage:

Median Latitude: 48.669242 * Median Longitude: -60.463939 * South-bound Latitude: 45.383333 * West-bound Longitude: -68.583333 * North-bound Latitude: 50.733333 * East-bound Longitude: -54.266667

Date/Time Start: 2018-05-01T00:00:00 * Date/Time End: 2019-11-01T00:00:00

Event(s):

EC_Pandalus_2019 * Latitude: 50.733333 * Longitude: -57.483333 * Date/Time: 2019-07-01T00:00:00 * Location: Esquiman Channel * Method/Device: Shrimp trawler

ESS_Pandalus_2019 * Latitude: 45.383333 * Longitude: -61.066667 * Date/Time: 2019-02-01T00:00:00 * Location: Eastern Scotian Shelf * Method/Device: Shrimp trap

NNC_Pandalus_2019 * Latitude: 50.300000 * Longitude: -54.266667 * Date/Time: 2019-11-01T00:00:00 * Location: Northeast Newfoundland Coast * Method/Device: Shrimp trawler

Comment:

This project was further supported by:

1: The DFO Strategic Program for Ecosystem-Based Research and Advice

2.The Aquatic Climate Change Adaptation Services Program

3. FIR UQAR

4. MITACS-Ouranos Accelerate

5. The Canada Foundation for Innovation (CFI)

6. Réal-Decoste Ouranos scholarship (286109)

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Guscelli, Ella
2	Event label	Event		Guscelli, Ella		change following treatment
3	LATITUDE	Latitude		Guscelli, Ella		Geocode – change following treatment
4	LONGITUDE	Longitude		Guscelli, Ella		Geocode – change following treatment
5	Origin	Origin		Guscelli, Ella
6	DATE/TIME	Date/Time		Guscelli, Ella		Geocode
7	Species	Species		Guscelli, Ella
8	Species, unique identification (URI)	Species UID (URI)		Guscelli, Ella
9	Individual ID	Ind ID		Guscelli, Ella
10	Treatment	Treat		Guscelli, Ella
11	Treatment: temperature	T:temp	°C	Guscelli, Ella
12	Treatment: pH	T:pH		Guscelli, Ella
13	Phenylalanine, per wet mass	Phe wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
14	Tryptophan, per wet mass	Trp wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
15	Betaine, per wet mass	Betaine wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
16	Isoleucine, per wet mass	Ile wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
17	Tyrosine, per wet mass	Tyr wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
18	Valine, per wet mass	Val wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
19	beta-aminoisobutyric acid, per wet mass	b-AIBA wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
20	alpha-aminobutyric acid, per wet mass	a-ABA wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
21	Hydroxyproline, per wet mass	Hyp wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
22	Threonine, per wet mass	Thr wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
23	Glutamine, per wet mass	Gln wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
24	Glycine, per wet mass	Gly wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
25	Serine, per wet mass	Ser wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
26	alpha-aminoadipic acid, per wet mass	a-AAA wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
27	Adenosine monophosphate, per wet mass	AMP wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
28	Glutamate, per wet mass	Glutamate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
29	Flavin adenine dinucleotide, per wet mass	FAD wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
30	Aspartate, per wet mass	Aspartate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
31	Histidine, per wet mass	His wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
32	Nicotinamide adenine dinucleotide, per wet mass	NAD wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
33	Lysine, per wet mass	Lys wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
34	Cystine, per wet mass	Cystine wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
35	Pyruvate, per wet mass	Pyruvate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
36	Glucose, per wet mass	Glc wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
37	Nicotinamide adenine dinucleotide, reduced, per wet mass	NADH wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
38	alpha-ketoglutaric acid, per wet mass	a-AKGA wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
39	Succinate, per wet mass	Succinate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
40	Fumarate, per wet mass	Fumarate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
41	Malate, per wet mass	Malate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
42	Adenosine diphosphate, per wet mass	ADP wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
43	Adenosine triphosphate, per wet mass	ATP wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
44	Glucose-6-phosphate, per wet mass	G6P wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
45	Citrate, per wet mass	Citrate wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
46	Phosphoenolpyruvate, per wet mass	PEP wm	ng/mg	Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment
47	ATP/ADP ratio, per wet mass	ATP/ADP wm		Guscelli, Ella	Ultra-high-performance liquid chromatography (UHPLC), Agilent Technologies, 1260 Infinity II Prime; coupled with Triple quadrupole mass spectrometer, Agilent Technologies, 6420	change following treatment

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

9460 data points

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