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Schumm, Yvonne; Lederer-Ponzer, Naemi; Masello, Juan F; Quillfeldt, Petra (2023): Metadata and sampling record of Eurasian Jays from Hesse, Germany 2020/21 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.961493

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Published: 2023-08-25 • DOI registered: 2023-09-23

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Abstract:
Eurasian Jays Garrulus glandarius (Corvidae, n = 16) were trapped in Caldern, Hesse, Central Germany in the years 2020 and 2021 to check for the presence of haemosporidian parasites. For this we collected metadata (e.g. collection date, sex, measurements) as well as feather, faeces and blood samples for subsequent analysis of haemosporidian parasites (Haemoproteus and Leucocytozoon). All individuals were infected with at least one haemosporidian genus. The most common infection pattern was a mixed infection with Haemoproteus and Leucocytozoon, whereas no Plasmodium infection was detected in any of the samples of the Jays.
Keyword(s):
Bird; Blood; Eurasian Jay; Parasitology
Related to:
Schumm, Yvonne; Lederer-Ponzer, Naemi; Masello, Juan F; Quillfeldt, Petra (2023): Blood smear counts of Haemosporidian parasites in Eurasian Jays from Hesse, Germany 2020/21 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.961255
Schumm, Yvonne; Lederer-Ponzer, Naemi; Masello, Juan F; Quillfeldt, Petra (2023): Blood smear images of Haemosporidian parasites in Eurasian Jays from Hesse, Germany 2020/21 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.961154
References:
Schumm, Yvonne; Lederer-Ponzer, Naemi; Masello, Juan F; Quillfeldt, Petra (2024): High prevalence of haemosporidian parasites in Eurasian jays. Parasitology Research, 123(4), 182, https://doi.org/10.1007/s00436-024-08170-9
Documentation:
Avian Malaria Initiative database report for Haemoproteus and Leucocytozoo parasite search
Avian Malaria Initiative database search results for Haemoproteus and Leucocytozoon parasite origins.
Definition of "Country" trait to build lineage network, file #1
Definition of "Country" trait to build lineage network, file #2
PCR protocol for Haemoproteus and Leucocytozoon DNA identification
Funding:
Hessian Ministry for Science and the Arts, grant/award no. LOEWE_Nature4: LOEWE priority project Nature 4.0 - Sensing Biodiversity
Coverage:
Median Latitude: 50.839933 * Median Longitude: 8.673507 * South-bound Latitude: 50.836747 * West-bound Longitude: 8.663628 * North-bound Latitude: 50.842530 * East-bound Longitude: 8.682997
Date/Time Start: 2020-05-20T11:45:00 * Date/Time End: 2021-07-21T18:40:00
Event(s):
Hesse_Jay_2020_1  * Latitude: 50.842530 * Longitude: 8.670560 * Date/Time: 2020-05-25T18:15:00 * Location: Hesse * Method/Device: Walk-in bird trap
Hesse_Jay_2020_2  * Latitude: 50.842334 * Longitude: 8.677742 * Date/Time: 2021-07-21T18:40:00 * Location: Hesse * Method/Device: Walk-in bird trap
Hesse_Jay_2020_3  * Latitude: 50.840457 * Longitude: 8.682997 * Date/Time: 2020-05-25T18:45:00 * Location: Hesse * Method/Device: Walk-in bird trap
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1 Event labelEventSchumm, Yvonne
2 Sample code/labelSample labelSchumm, Yvonne
3 LATITUDELatitudeSchumm, YvonneGeocode
4 LONGITUDELongitudeSchumm, YvonneGeocode
5 DATE/TIMEDate/TimeSchumm, YvonneGeocode
6 LocationLocationSchumm, Yvonne
7 CountryCountrySchumm, Yvonne
8 Location IDLoc IDSchumm, Yvonne
9 IdentificationIDSchumm, Yvonne
10 Method commentMethod commSchumm, YvonneCapture method
11 Life stageLife stageSchumm, Yvonne
12 SexSexSchumm, Yvonne
13 Wing, lengthWing lmmSchumm, Yvonne
14 Wing, length, primary 8Wing l P8mmSchumm, Yvonne
15 Tarsus, lengthTarsus lmmSchumm, Yvonne
16 Aves, body massAves BMgSchumm, Yvonne
17 SamplingSamplingSchumm, Yvonneof body feather
18 SamplingSamplingSchumm, Yvonneof faeces
19 SamplingSamplingSchumm, Yvonneusing FTA sampling cards
20 SamplingSamplingSchumm, Yvonneof blood smear
21 SamplingSamplingSchumm, Yvonneof blood stored in ethanol
22 DNA concentrationDNA concng/µlSchumm, YvonneUV-Vis spectrophotometer, Thermo Scientific, NanoDrop 2000c
23 Absorption coefficient, 260 nmac2601/mSchumm, YvonneUV-Vis spectrophotometer, Thermo Scientific, NanoDrop 2000c
24 Absorption coefficient, 280 nmac2801/mSchumm, YvonneUV-Vis spectrophotometer, Thermo Scientific, NanoDrop 2000c
25 Absorption coefficient, 260 nm/280 nm, ratioac260/280Schumm, YvonneCalculated
26 Absorption coefficient, 260 nm/230 nm, ratioac260/230Schumm, YvonneCalculated
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
326 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 
Event		2 
Sample label		3 
Latitude		4 
Longitude		5 
Date/Time		6 
Location		7 
Country		8 
Loc ID		9 
ID		10 
Method comm
(Capture method)		11 
Life stage		12 
Sex		13 
Wing l [mm]		14 
Wing l P8 [mm]		15 
Tarsus l [mm]		16 
Aves BM [g]		17 
Sampling
(of body feather)		18 
Sampling
(of faeces)		19 
Sampling
(using FTA sampling cards)		20 
Sampling
(of blood smear)		21 
Sampling
(of blood stored in ethanol)		22 
DNA conc [ng/µl]
(UV-Vis spectrophotometer, The...)		23 
ac260 [1/m]
(UV-Vis spectrophotometer, The...)		24 
ac280 [1/m]
(UV-Vis spectrophotometer, The...)		25 
ac260/280
(Calculated)		26 
ac260/230
(Calculated)
Jay_0150.8367478.6636282020-05-20T11:45:00HesseGermanyFS_3walk-in trapAdultmale179135424158sampledsampledsampledsampledsampled
Jay_0250.8367478.6636282020-05-25T17:40:00HesseGermanyFS_36415101.0walk-in trapAdultmale185136422152sampledsampledsampledsampledsampled18.40.3680.2001.840.52
Hesse_Jay_2020_1 Jay_0350.8425308.6705602020-05-25T18:15:00HesseGermanyFS_16415102.0walk-in trapAdultmale175127434162sampledsampledsampledsampledsampled
Hesse_Jay_2020_3 Jay_0450.8404578.6829972020-05-25T18:45:00HesseGermanyFS_46415103.0walk-in trapAdultmale188134444172sampledsampledsampledsampledsampled
Hesse_Jay_2020_3Jay_0550.8404578.6829972020-05-28T20:35:00HesseGermanyFS_46415104.0walk-in trapAdultfemale185131433182sampledsampledsampledsampledsampled
Hesse_Jay_2020_3Jay_0650.8404578.6829972020-06-03T20:35:00HesseGermanyFS_46415105.0walk-in trapAdultmale185142423170samplednot sampledsampledsampledsampled117.02.3401.2501.871.16
Hesse_Jay_2020_3Jay_0750.8404578.6829972020-06-03T21:00:00HesseGermanyFS_46415106.0walk-in trapAdultfemale172127410158samplednot sampledsampledsampledsampled
Hesse_Jay_2020_1Jay_0850.8425308.6705602021-04-30T12:43:00HesseGermanyFS_16415107.0walk-in trapAdultmale181130419169sampledsampledsampledsampledsampled8.60.1730.0981.770.40
Hesse_Jay_2020_1Jay_0950.8425308.6705602021-04-30T19:49:00HesseGermanyFS_16415108.0walk-in trapAdultfemale182139423160samplednot sampledsampledsampledsampled9.00.1790.1051.710.24
Jay_1050.8367478.6636282021-06-02T16:08:00HesseGermanyFS_36415109.0walk-in trapAdultmale190138435187samplednot sampledsampledsampledsampled3.00.0610.0331.820.05
Hesse_Jay_2020_1Jay_1150.8425308.6705602021-06-16T17:20:00HesseGermanyFS_16415110.0walk-in trapAdultmale193139429147samplednot sampledsampledsampledsampled4.10.0820.0511.620.17
Hesse_Jay_2020_3Jay_1250.8404578.6829972021-06-16T18:44:00HesseGermanyFS_46415111.0walk-in trapAdultfemale180129428157sampledsampledsampledsampledsampled10.90.2170.1271.710.47
Jay_1350.8367478.6636282021-06-16T21:18:00HesseGermanyFS_36415112.0walk-in trapAdultmale185134442160sampledsampledsampledsampledsampled7.20.1440.0891.620.08
Jay_1450.8367478.6636282021-06-21T19:07:00HesseGermanyFS_36415113.0walk-in trapAdultfemale171126431167samplednot sampledsampledsampledsampled10.70.2140.1301.650.35
Hesse_Jay_2020_3Jay_1550.8404578.6829972021-07-12T19:18:00HesseGermanyFS_46415114.0walk-in trapAdultmale180129426170samplednot sampledsampledsampledsampled5.40.1080.0631.710.16
Hesse_Jay_2020_2 Jay_1650.8423348.6777422021-07-21T18:40:00HesseGermanySL_36415115.0walk-in trapAdultmale179130430177samplednot sampledsampledsampledsampled7.20.1440.0911.590.34