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Hörterer, Christina; Lannig, Gisela; Bock, Christian; Buck, Bela Hieronymus (2023): Untargeted 1H‐NMR based metabolic profiling of liver and muscle tissue of juvenile turbot (Scophthalmus maximus) fed with emerging protein sources [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.960831

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Abstract:
This study examined the metabolic response of juvenile turbot (Scophthalmus maximus) to diets with graded fishmeal (FM) replacement with plant, animal, and emerging protein sources (PLANT, PAP, and MIX) in comparison to a commercial-like diet (CTRL). The feeding experiment was carried out from April to July 2019 in the Centre for Aquaculture Research (ZAF) at the Alfred Wegener Institute for Polar and Marine research in Bremerhaven, Germany. The juvenile turbot (Scophthalmus maximus) were purchased from France Turbot (L'Épine, France) and acclimated to the recirculating aquaculture system (RAS) for 2 weeks prior to starting the 16 weeks experimental trial. To elucidate the effects of the protein sources and the level of FM replacement on the metabolic response of the fish, a 1H‐nuclear magnetic resonance (NMR) spectroscopy was used to assess the metabolic profiles of muscle and liver tissue after feeding the fish the experimental diets for 16 weeks. Feed, muscle, and liver samples were ground under liquid nitrogen and approx. 200–250 mg tissue was homogenized in 5x volume of ice‐cold 0.6 M perchloric acid (PCA) (w:v). After one cycle of 20 s at 6000 rpm and 3 °C, using Precellys 24 (Bertin Technologies, Montigny‐le‐Bretonneux, France), samples were sonicated for 2 min at 0 °C and 360 W (Branson Sonifier 450, FisherScientific, Schwerte, Germany). Homogenates of the experimental diets, muscle and liver tissues were centrifuged for 2 min at 0 °C and 16,000 g, and supernatants were neutralized with ice cold potassium hydroxide (KOH) and PCA to pH 7.0–7.5. To remove precipitated potassium, perchlorate samples were centrifuged again for 2 min at 0 °C and 16,000 g. The entire supernatant was transferred, shock‐ frozen in liquid nitrogen, and stored an −80 °C for later analysis. One‐dimensional 1H‐NMR spectra for feed and tissues extracts were acquired using a vertical 9.4 T wide bore magnet with Avance III HD (Bruker‐GmbH, Ettlingen, Germany) at 400.13 MHz with a 1.7 mm diameter triple tuned (1H‐13C‐15N) probe. Each spectrum was processed and analyzed with Chenomx NMR Suite 8.4 software (Chenomx Inc., Edmonton, Canada). Before analyzing, the spectra were corrected for phase, shim and baseline and calibrated to trymethylsilyl proprionate (TSP) signal (at 0.0 ppm).
Keyword(s):
betaine; by-product; insect meal; Laboratory experiment; TMAO
Related to:
Hörterer, Christina; Petereit, Jessica; Lannig, Gisela; Bock, Christian; Buck, Bela Hieronymus (2023): 1H-NMR-Based Metabolic Profiling in Muscle and Liver Tissue of Juvenile Turbot (Scophthalmus maximus) Fed with Plant and Animal Protein Sources. Metabolites, 13(5), 612, https://doi.org/10.3390/metabo13050612
Hörterer, Christina; Petereit, Jessica; Lannig, Gisela; Johansen, Johan; Pereira, Gabriella V; Conceição, Luis E C; Pastres, Roberto; Buck, Bela Hieronymus (2022): Sustainable fish feeds: potential of emerging protein sources in diets for juvenile turbot (Scophthalmus maximus) in RAS. Aquaculture International, 30, 1481-1504, https://doi.org/10.1007/s10499-022-00859-x
Funding:
Horizon 2020 (H2020), grant/award no. 773330: Green Aquaculture Intensification in Europe
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1ExperimentExpHörterer, ChristinaGAIN (project)_SM1 (Species; Experiment 1)
2Type of studyStudy typeHörterer, Christina
3Species, unique identificationSpecies UIDHörterer, Christina
4Species, unique identification (Semantic URI)Species UID (Semantic URI)Hörterer, Christina
5Species, unique identification (URI)Species UID (URI)Hörterer, Christina
6AnalysisAnalysisHörterer, Christina1H-Nuclear magnetic resonance spektrum, Avance III HD, Bruker GmbK, Germany
7LocationLocationHörterer, Christina
8Method commentMethod commHörterer, ChristinaSystem: Centre for Aquaculture Research (ZAF), Recirculating Aquaculture System (KL) #1
9Sampling date/time, experimentDate/time sampling expHörterer, ChristinaDate fish was sampled from tank
10Time point, descriptiveTime pointHörterer, Christinafinal sampling at end of experiment
11Tank numberTank NoHörterer, ChristinaFibre glas tanks, 0.7 m3, total number 36
12IdentificationIDHörterer, ChristinaFish#: Individual Fish sampled
13Sample IDSample IDHörterer, Christinasampling point_Tank_Fish#
14TreatmentTreatHörterer, ChristinaFormulation concept: CTRL - commercial-like diet; PLANT - plant protein sources, PAP - animal protein source, MIX - emerging protein source
15TreatmentTreatHörterer, ChristinaFMR - Fishmeal replacement level (0; 20; 40)
16MaterialMaterialHörterer, Christinasampled material
17Analysis date/time, experimentDate/time analysis expHörterer, Christina
18Experiment numberExp noHörterer, ChristinaNumber of slot in Bruker
19Sample, optional label/labor noLab noHörterer, ChristinaSample number identification for NMR
20AcetateAcetatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
21AdenineAdeninemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
22Adenosine diphosphateADPmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
23AlanineAlammol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
24Adenosine monophosphateAMPmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
25AnserineAnserinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
26ArginineArgmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
27AspartateAspartatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
28Adenosine triphosphateATPmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
29BetaineBetainemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
30CarnitineCarnitinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
31CholineCholinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
32CreatineCreatinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
33Creatine phosphateCreatine phosphatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
34CreatinineCreatininemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
35DimethylamineDMAmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
36Dimethyl sulfoneDMSO2mmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
37FormateFormatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
38FumarateFumaratemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
39D-Glucose 6-phosphateD-Glucose 6-phosphatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
40GlutamateGlutamatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
41GlutamineGlnmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
42GlycineGlymmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
43IsoleucineIlemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
44LactateLactatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
45LeucineLeummol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
46MalonateMalonatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
47MethionineMethioninemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
48N,N-DimethylglycineNN-Dimethylglycinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
49O-PhosphocholineO-Phosphocholinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
50ProlineProlinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
51SarcosineSarcosinemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
52SuccinateSuccinatemmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
53TaurineTaummol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
54ThreonineThrmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
55Trimethylamine N-oxideTMAOmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
56ValineValmmol/lHörterer, ChristinaNuclear magnetic resonance spectrometer (NMR), Bruker, Avance III HD 400annotated metabolite with Chenomx software from spectrum
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
6200 data points

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