Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Annotation of metabolites produced by bacteria isolated from the mesopelagic jellyfish Periphylla periphylla [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.959962, In: Oppong-Danquah, E et al. (2023): Isolation and untargeted metabolomics of microorganisms from the mesopelagic jellyfish Periphylla periphylla [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.959939
Always quote citation above when using data! You can download the citation in several formats below.
Abstract:
Putative annotation of metabolites produced by the Psychrobacter sp. SU143, Psychrobacter sp. SU137, Shewanella sp. SU126 and Polaribacter sp. SU124 in the liquid and solid regime of Marine Broth and Glucose-Yeast-Malt media. Annotation was based on the m/z [M+H]+ or other adducts, retention time, predicted molecular formula, fragmentation pattern and source of the hit. The source of the ion is indicated by the area under a peak (peak area count). Confidence level of annotation are given based on the reporting standards proposed by Sumner, et al. 2007, i.e. identified compound, is putative annotation without reference standards, is putative characterized compound class, and is unknown compound. The mass spectrometry data used for the molecular networking analysis were deposited in the MassIVE Public GNPS database under the accession number MSV000091067.
Supplement to:
Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish Periphylla Periphylla. Marine Drugs, 21(2), 129, https://doi.org/10.3390/md21020129
Related to:
Oppong-Danquah, Ernest (2023): MassIVE MSV000091067 - Periphylla associated microbiota_2020. MassIVE, https://doi.org/10.25345/C5K35MQ0K
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Project(s):
Funding:
Coverage:
Median Latitude: 63.186583 * Median Longitude: -18.894667 * South-bound Latitude: 63.157667 * West-bound Longitude: -18.896500 * North-bound Latitude: 63.215500 * East-bound Longitude: -18.892833
Date/Time Start: 2020-07-15T15:46:00 * Date/Time End: 2020-07-15T16:47:00
Minimum Elevation: -860.0 m * Maximum Elevation: -800.0 m
Event(s):
A7-2020_417 * Latitude Start: 63.215500 * Longitude Start: -18.896500 * Latitude End: 63.157667 * Longitude End: -18.892833 * Date/Time Start: 2020-07-15T15:46:00 * Date/Time End: 2020-07-15T16:47:00 * Elevation Start: -860.0 m * Elevation End: -800.0 m * Location: Nordic Seas * Campaign: IESSNS_2020 (A7-2020) * Basis: Arni Fridriksson * Method/Device: Multipurpose pelagic trawl - 832 (MULTPELT-832)
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Type of study | Study type | Oppong-Danquah, Ernest | |||
| 2 | Treatment: culture medium | T: culture medium | Oppong-Danquah, Ernest | |||
| 3 | Temperature, air | TTT | °C | Oppong-Danquah, Ernest | ||
| 4 | Bacterial strain | Bacterial strain | Oppong-Danquah, Ernest | |||
| 5 | Genus, unique identification | Genus UID | Oppong-Danquah, Ernest | Sanger Sequencing modified after Sanger et al. (1977) | ||
| 6 | Genus, unique identification (URI) | Genus UID (URI) | Oppong-Danquah, Ernest | Sanger Sequencing modified after Sanger et al. (1977) | ||
| 7 | Genus, unique identification (Semantic URI) | Genus UID (Semantic URI) | Oppong-Danquah, Ernest | Sanger Sequencing modified after Sanger et al. (1977) | ||
| 8 | Adduct ion | Adduct | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | ||
| 9 | Parent ion, molecular mass | Parent ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 10 | Retention time | Retention | min | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 11 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 12 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 13 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 14 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 15 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 16 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 17 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 18 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 19 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 20 | Fragment ion, molecular mass | Fragment ion m | u | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | |
| 21 | Peak area | Peak area | Oppong-Danquah, Ernest | Ultra-high-performance liquid chromatography (UHPLC), Waters, Acquity UPLC I-Class System; coupled with quadrupole-time-of-flight mass spectrometer, Waters, Xevo G2-XS QToF (LC-MS/MS) | ||
| 22 | Molecular formula | Formula | Oppong-Danquah, Ernest | Feature-based molecular networking according to Nothias et al. 2020 | ||
| 23 | Annotation | Annotation | Oppong-Danquah, Ernest | Feature-based molecular networking according to Nothias et al. 2020 | ||
| 24 | Class, compound | Compound class | Oppong-Danquah, Ernest | Feature-based molecular networking according to Nothias et al. 2020 | ||
| 25 | Confidence level | Conf | Oppong-Danquah, Ernest | Feature-based molecular networking according to Nothias et al. 2020 | ||
| 26 | Uniform resource locator/link to reference | URL ref | Oppong-Danquah, Ernest | 1 | ||
| 27 | Uniform resource locator/link to reference | URL ref | Oppong-Danquah, Ernest | 2 |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC) * Processing Level: PANGAEA data processing level 3 (ProcLevel3)
Size:
10257 data points
Download Data
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