Not logged in
PANGAEA.
Data Publisher for Earth & Environmental Science

Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Identification of bacteria isolated from the mesopelagic jellyfish Periphylla periphylla [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.959953, In: Oppong-Danquah, E et al. (2023): Isolation and untargeted metabolomics of microorganisms from the mesopelagic jellyfish Periphylla periphylla [dataset bundled publication]. PANGAEA, https://doi.org/10.1594/PANGAEA.959939

Always quote citation above when using data! You can download the citation in several formats below.

RIS CitationBibTeX CitationShow MapGoogle Earth

Abstract:
Identification of 16 selected bacteria associated to the umbrella of Periphylla periphylla collected in the Irminger Sea based on sequencing of the 16S ribosomal RNA gene and BLAST against the NCBI nucleotide database. The table displays the first 3 hits from two blastn searches, one against all database entries and the second against type strains only. Nucleotide identities (%) with database hits and NCBI accession numbers assigned to the isolated bacteria are also displayed. Colonies were cultured either in marine broth, Hastings medium or Wickerham medium for comparison.
Keyword(s):
Laboratory experiment
Supplement to:
Oppong-Danquah, Ernest; Miranda, Martina; Blümel, Martina; Tasdemir, Deniz (2023): Bioactivity Profiling and Untargeted Metabolomics of Microbiota Associated with Mesopelagic Jellyfish Periphylla Periphylla. Marine Drugs, 21(2), 129, https://doi.org/10.3390/md21020129
Project(s):
Sustainable Management of Mesopelagic Resources (SUMMER)
Funding:
Horizon 2020 (H2020), grant/award no. 817806: Sustainable management of mesopelagic resources
Coverage:
Median Latitude: 63.186583 * Median Longitude: -18.894667 * South-bound Latitude: 63.157667 * West-bound Longitude: -18.896500 * North-bound Latitude: 63.215500 * East-bound Longitude: -18.892833
Date/Time Start: 2020-07-15T15:46:00 * Date/Time End: 2020-07-15T16:47:00
Minimum Elevation: -860.0 m * Maximum Elevation: -800.0 m
Event(s):
A7-2020_417 * Latitude Start: 63.215500 * Longitude Start: -18.896500 * Latitude End: 63.157667 * Longitude End: -18.892833 * Date/Time Start: 2020-07-15T15:46:00 * Date/Time End: 2020-07-15T16:47:00 * Elevation Start: -860.0 m * Elevation End: -800.0 m * Location: Nordic Seas * Campaign: IESSNS_2020 (A7-2020) * Basis: Arni Fridriksson * Method/Device: Multipurpose pelagic trawl - 832 (MULTPELT-832)
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1Type of studyStudy typeOppong-Danquah, Ernest
2Source materialSource matOppong-Danquah, Ernest
3Species, unique identificationSpecies UIDOppong-Danquah, ErnestVisual identification (VID)host
4Species, unique identification (URI)Species UID (URI)Oppong-Danquah, ErnestVisual identification (VID)host
5Species, unique identification (Semantic URI)Species UID (Semantic URI)Oppong-Danquah, ErnestVisual identification (VID)host
6Treatment: culture mediumT: culture mediumOppong-Danquah, Ernest
7Temperature, airTTT°COppong-Danquah, Ernest
8Bacterial strainBacterial strainOppong-Danquah, Ernest
9Accession number, geneticsAccess no genOppong-Danquah, Ernestisolate
10Gene nameGeneOppong-Danquah, Ernest
11Sequence lengthSeq lbpOppong-Danquah, ErnestSanger Sequencing modified after Sanger et al. (1977)isolate
12Bacterial strainBacterial strainOppong-Danquah, ErnestBasic Local Alignment Search Tool, National Center for Biotechnology Information, Nucleotide BLAST (blastn)matches against entire database
13IdentityIdent%Oppong-Danquah, ErnestBasic Local Alignment Search Tool, National Center for Biotechnology Information, Nucleotide BLAST (blastn)matches against entire database
14Accession number, geneticsAccess no genOppong-Danquah, ErnestBasic Local Alignment Search Tool, National Center for Biotechnology Information, Nucleotide BLAST (blastn)matches against entire database
15Bacterial strainBacterial strainOppong-Danquah, ErnestBasic Local Alignment Search Tool, National Center for Biotechnology Information, Nucleotide BLAST (blastn)matches against type strain only
16IdentityIdent%Oppong-Danquah, ErnestBasic Local Alignment Search Tool, National Center for Biotechnology Information, Nucleotide BLAST (blastn)matches against type strain only
17Accession number, geneticsAccess no genOppong-Danquah, ErnestBasic Local Alignment Search Tool, National Center for Biotechnology Information, Nucleotide BLAST (blastn)matches against type strain only
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC) * Processing Level: PANGAEA data processing level 3 (ProcLevel3)
Size:
720 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML