Citation:

PANGAEA.959915

Name: Seawater carbonate chemistry and cellular metabolism of the great scallop Pecten maximus
Published: 2023-06-20
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Animalia; Benthic animals; Benthos; Brackish waters; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Other studied parameter or process; Oxygen; Pecten maximus; Single species; Temperate; Temperature

Always quote citation above when using data! You can download the citation in several formats below.

RIS Citation BibTeX Citation Text Citation Facebook TwitterShow Map Google Earth

Abstract:

In the ocean the main climate drivers affecting marine organisms are warming, hypercapnia, and hypoxia. We investigated the acute effects of warming (W), warming plus hypercapnia (WHc, ~1800 μatm CO2), warming plus hypoxia (WHo, ~12.1 kPa O2), and a combined exposure of all three drivers (Deadly Trio, DT) on king scallops (Pecten maximus). All exposures started at 14 °C and temperature was increased by 2 °C once every 48 h until the lethal temperature was reached (28 °C). Gill samples were taken at 14 °C, 18 °C, 22 °C, and 26 °C and analyzed for their metabolic response by 1H-nuclear magnetic resonance (NMR) spectroscopy. Scallops were most tolerant to WHc and most susceptible to oxygen reduction (WHo and DT). In particular under DT, scallops' mitochondrial energy metabolism was affected. Changes became apparent at 22 °C and 26 °C involving significant accumulation of glycogenic amino acids (e.g. glycine and valine) and anaerobic end-products (e.g. acetic acid and succinate). In line with these observations the LT50 was lower under the exposure to DT (22.5 °C) than to W alone (~ 25 °C) indicating a narrowing of the thermal niche due to an imbalance between oxygen demand and supply.

Keyword(s):

Animalia; Benthic animals; Benthos; Brackish waters; Containers and aquaria (20-1000 L or < 1 m**2); Laboratory experiment; Mollusca; Mortality/Survival; North Atlantic; Other studied parameter or process; Oxygen; Pecten maximus; Single species; Temperate; Temperature

Supplement to:

Götze, Sandra; Bock, Christian; Eymann, Charlotte; Lannig, Gisela; Steffen, Jennifer B M; Pörtner, Hans-Otto (2020): Single and combined effects of the “Deadly trio” hypoxia, hypercapnia and warming on the cellular metabolism of the great scallop Pecten maximus. Comparative Biochemistry and Physiology Part B: Biochemistry & Molecular Biology, 243-244, 110438, https://doi.org/10.1016/j.cbpb.2020.110438

Source:

Götze, Sandra; Bock, Christian; Eymann, Charlotte; Lannig, Gisela; Steffen, Jennifer B M; Pörtner, Hans-Otto (2020): Metabolites in gills measured during exposure experiments on the cellular metabolism of the great scallop Pecten maximus. PANGAEA, https://doi.org/10.1594/PANGAEA.921722

Götze, Sandra; Bock, Christian; Eymann, Charlotte; Lannig, Gisela; Steffen, Jennifer B M; Pörtner, Hans-Otto (2020): Metabolites in phasic muscle tissue measured during exposure experiments on the cellular metabolism of the great scallop Pecten maximus. PANGAEA, https://doi.org/10.1594/PANGAEA.921721

Götze, Sandra; Bock, Christian; Eymann, Charlotte; Lannig, Gisela; Steffen, Jennifer B M; Pörtner, Hans-Otto (2020): Mortality measured during exposure experiments on the cellular metabolism of the great scallop Pecten maximus. PANGAEA, https://doi.org/10.1594/PANGAEA.921723

Documentation:

Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html

Project(s):

Ocean Acidification International Coordination Centre (OA-ICC)

Coverage:

Latitude: 42.212900 * Longitude: -8.738500

Event(s):

estuary_Vigo * Latitude: 42.212900 * Longitude: -8.738500 * Method/Device: Experiment (EXP)

Comment:

In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2022) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2023-06-20.

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Type of study	Study type		Götze, Sandra
2	Species, unique identification	Species UID		Götze, Sandra
3	Species, unique identification (URI)	Species UID (URI)		Götze, Sandra
4	Species, unique identification (Semantic URI)	Species UID (Semantic URI)		Götze, Sandra
5	Treatment	Treat		Götze, Sandra
6	Temperature, technical	T tech	°C	Götze, Sandra
7	Individuals	Ind	#	Götze, Sandra		remaining total
8	Individuals	Ind	#	Götze, Sandra		dead
9	Individuals	Ind	#	Götze, Sandra		remaining alive
10	Survival	Survival	%	Götze, Sandra
11	Identification	ID		Götze, Sandra		scallop
12	Sample type	Samp type		Götze, Sandra
13	Uridine diphosphate glucose	UDP glc	mmol/l	Götze, Sandra	1H NMR spectroscopy
14	Triphosphates	TP	mmol/l	Götze, Sandra	1H NMR spectroscopy
15	Succinate	Succinate	mmol/l	Götze, Sandra	1H NMR spectroscopy
16	Valine	Val	nmol/l	Götze, Sandra	1H NMR spectroscopy
17	Leucine	Leu	nmol/l	Götze, Sandra	1H NMR spectroscopy
18	Isoleucine	Ile	mmol/l	Götze, Sandra	1H NMR spectroscopy
19	Lysine	Lys	mmol/l	Götze, Sandra	1H NMR spectroscopy
20	Arginine	Arg	mmol/l	Götze, Sandra	1H NMR spectroscopy
21	Glutamine	Gln	mmol/l	Götze, Sandra	1H NMR spectroscopy
22	Homocysteine	Homocysteine	mmol/l	Götze, Sandra	1H NMR spectroscopy
23	Glutamate	Glutamate	mmol/l	Götze, Sandra	1H NMR spectroscopy
24	Alanine	Ala	mmol/l	Götze, Sandra	1H NMR spectroscopy
25	beta-Alanine	b-ala	mmol/l	Götze, Sandra	1H NMR spectroscopy
26	Aspartate	Aspartate	mmol/l	Götze, Sandra	1H NMR spectroscopy
27	Glycine	Gly	mmol/l	Götze, Sandra	1H NMR spectroscopy
28	Sarcosine	Sarcosine	mmol/l	Götze, Sandra	1H NMR spectroscopy
29	Threonine	Thr	mmol/l	Götze, Sandra	1H NMR spectroscopy
30	Taurine	Tau	mmol/l	Götze, Sandra	1H NMR spectroscopy
31	Hypotaurine	Hypotaurine	mmol/l	Götze, Sandra	1H NMR spectroscopy
32	Betaine	Betaine	mmol/l	Götze, Sandra	1H NMR spectroscopy
33	sn-Glycero-3-phosphocholine	sn-Glycero-3-phosphocholine	mmol/l	Götze, Sandra	1H NMR spectroscopy
34	Choline	Choline	mmol/l	Götze, Sandra	1H NMR spectroscopy
35	O-Phosphocholine	O-Phosphocholine	mmol/l	Götze, Sandra	1H NMR spectroscopy
36	Trimethylamine N-oxide	TMAO	mmol/l	Götze, Sandra	1H NMR spectroscopy
37	Trimethylamine	TMA	mmol/l	Götze, Sandra	1H NMR spectroscopy
38	Dimethylamine	DMA	mmol/l	Götze, Sandra	1H NMR spectroscopy
39	Acetate	Acetate	mmol/l	Götze, Sandra	1H NMR spectroscopy
40	Acetoacetate	Acetoacetate	mmol/l	Götze, Sandra	1H NMR spectroscopy
41	Dimethyl sulfone	DMSO2	mmol/l	Götze, Sandra	1H NMR spectroscopy
42	N,N-Dimethylglycine	NN-Dimethylglycine	mmol/l	Götze, Sandra	1H NMR spectroscopy
43	Trigonelline	Trigonelline	mmol/l	Götze, Sandra	1H NMR spectroscopy
44	Homarine	Homarine	mmol/l	Götze, Sandra	1H NMR spectroscopy
45	Homarine	Homarine	mmol/l	Götze, Sandra	1H NMR spectroscopy
46	Taurine	Tau	mmol/l	Götze, Sandra	1H NMR spectroscopy
47	Trimethylamine N-oxide	TMAO	mmol/l	Götze, Sandra	1H NMR spectroscopy
48	Betaine	Betaine	mmol/l	Götze, Sandra	1H NMR spectroscopy
49	Malonate	Malonate	mmol/l	Götze, Sandra	1H NMR spectroscopy
50	Glycine	Gly	mmol/l	Götze, Sandra	1H NMR spectroscopy
51	Carnitine	Carnitine	mmol/l	Götze, Sandra	1H NMR spectroscopy
52	O-Acetylcarnitine	O-Acetylcarnitine	mmol/l	Götze, Sandra	1H NMR spectroscopy
53	Arginine	Arg	mmol/l	Götze, Sandra	1H NMR spectroscopy
54	Alanine	Ala	mmol/l	Götze, Sandra	1H NMR spectroscopy
55	Threonine	Thr	mmol/l	Götze, Sandra	1H NMR spectroscopy
56	Glutamate	Glutamate	mmol/l	Götze, Sandra	1H NMR spectroscopy
57	Triphosphates	TP	mmol/l	Götze, Sandra	1H NMR spectroscopy
58	Sarcosine	Sarcosine	mmol/l	Götze, Sandra	1H NMR spectroscopy
59	Aspartate	Aspartate	mmol/l	Götze, Sandra	1H NMR spectroscopy
60	Valine	Val	mmol/l	Götze, Sandra	1H NMR spectroscopy
61	Leucine	Leu	mmol/l	Götze, Sandra	1H NMR spectroscopy
62	Isoleucine	Ile	mmol/l	Götze, Sandra	1H NMR spectroscopy
63	Dimethylamine	DMA	mmol/l	Götze, Sandra	1H NMR spectroscopy
64	Trimethylamine	TMA	mmol/l	Götze, Sandra	1H NMR spectroscopy
65	N,N-Dimethylglycine	NN-Dimethylglycine	mmol/l	Götze, Sandra	1H NMR spectroscopy
66	Succinate	Succinate	mmol/l	Götze, Sandra	1H NMR spectroscopy
67	Creatine	Creatine	mmol/l	Götze, Sandra	1H NMR spectroscopy
68	Hypotaurine	Hypotaurine	mmol/l	Götze, Sandra	1H NMR spectroscopy
69	Trigonelline	Trigonelline	mmol/l	Götze, Sandra	1H NMR spectroscopy
70	Lactate	Lactate	mmol/l	Götze, Sandra	1H NMR spectroscopy
71	Octopine	Octopine	mmol/l	Götze, Sandra	1H NMR spectroscopy
72	Temperature, water	Temp	°C	Götze, Sandra
73	Temperature, water, standard deviation	Temp std dev	±	Götze, Sandra
74	Salinity	Sal		Götze, Sandra
75	Salinity, standard deviation	Sal std dev	±	Götze, Sandra
76	pH	pH		Götze, Sandra		free scale
77	pH, standard deviation	pH std dev	±	Götze, Sandra
78	Oxygen, partial pressure	pO2	kPa	Götze, Sandra
79	Oxygen, partial pressure, standard deviation	pO2 std dev	±	Götze, Sandra
80	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Götze, Sandra
81	Partial pressure of carbon dioxide, standard deviation	pCO2 std dev	±	Götze, Sandra
82	Carbonate system computation flag	CSC flag		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
83	pH	pH		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)	total scale
84	Carbon dioxide	CO2	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
85	Fugacity of carbon dioxide (water) at sea surface temperature (wet air)	fCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
86	Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)	pCO2water_SST_wet	µatm	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
87	Bicarbonate ion	[HCO3]-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
88	Carbonate ion	[CO3]2-	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
89	Carbon, inorganic, dissolved	DIC	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
90	Alkalinity, total	AT	µmol/kg	Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
91	Aragonite saturation state	Omega Arg		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)
92	Calcite saturation state	Omega Cal		Yang, Yan	Calculated using seacarb after Nisumaa et al. (2010)

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

10830 data points

Download Data

Download dataset as tab-delimited text — use the following character encoding:

View dataset as HTML (shows only first 2000 rows)