Turner Lucy M lucy.m.turner@plymouth.ac.uk 0000-0002-9052-9498 Madeira Diana dianabmar@gmail.com 0000-0002-2435-9283 Ricevuto Elena elenaricevuto@gmail.com Massa Gallucci Alexia alexia.massagallucci@gmail.com Sommer Ulf ulfsommer1@gmail.com Viant Mark R m.viant@bham.ac.uk 0000-0001-5898-4119 Dineshram Ramadoss dinbiot@gmail.com Gambi Maria Cristina gambimc@gmail.com 0000-0002-0168-776X Calosi Piero Piero_Calosi@uqar.ca 0000-0003-3378-2603 2023 Proteomic profiles of Platynereis spp. collected from inside and outside the CO2 vent (Ischia, Italy) and used in a reciprocal transplant experiment in September 2013 dataset https://doi.org/10.1594/PANGAEA.953832 2023-02-08T12:47:12 Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) (stations A1-A3) or outside (40°43'33.33"N, 13°57'36.38"E and 40°44′48″N, 13°56′39″E) (stations C1-C3) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the proteome of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. This experiment was conducted between 04/09/2013 and 16/09/2013. The experiment was staggered during this time so all worms could be processed. After five days exposure to either low or high CO2 conditions worms were snap frozen in liquid nitrogen and shipped to the University of Hong Kong for proteomic analysis which was finalised on 02/08/2015. Proteomic profiles of worms were characterised using a liquid chromatography-mass spectrometry/mass spectrometry triple time of flight (LC-MS/ MS Triple TOF) approach. Turner Lucy M lucy.m.turner@plymouth.ac.uk 0000-0002-9052-9498 Madeira Diana dianabmar@gmail.com 0000-0002-2435-9283 Ricevuto Elena elenaricevuto@gmail.com Massa Gallucci Alexia alexia.massagallucci@gmail.com Sommer Ulf ulfsommer1@gmail.com Viant Mark R m.viant@bham.ac.uk 0000-0001-5898-4119 Dineshram Ramadoss dinbiot@gmail.com Gambi Maria Cristina gambimc@gmail.com 0000-0002-0168-776X Calosi Piero Piero_Calosi@uqar.ca 0000-0003-3378-2603 2025 Sibling species differently distributed around a CO2 vent show transplantation proteomic remodelling, while displaying metabolomic signatures associated with their origin journal article Scientific Reports 15(1) https://doi.org/10.1038/s41598-025-18913-y 33604 Chong Jasmine Wishart David S Xia Jianguo 2019 Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis journal article Current Protocols in Bioinformatics 68 https://doi.org/10.1002/cpbi.86 e86 Turner Lucy M lucy.m.turner@plymouth.ac.uk 0000-0002-9052-9498 Madeira Diana dianabmar@gmail.com 0000-0002-2435-9283 Ricevuto Elena elenaricevuto@gmail.com Massa Gallucci Alexia alexia.massagallucci@gmail.com Sommer Ulf ulfsommer1@gmail.com Viant Mark R m.viant@bham.ac.uk 0000-0001-5898-4119 Dineshram Ramadoss dinbiot@gmail.com Gambi Maria Cristina gambimc@gmail.com 0000-0002-0168-776X Calosi Piero Piero_Calosi@uqar.ca 0000-0003-3378-2603 2023 Environmental conditions inside and outside the CO2 vent (Ischia, Italy) before and during a reciprocal transplant experiment with Platynereis spp. in September 2013 dataset https://doi.org/10.1594/PANGAEA.953826 Tyanova Stefka Cox Juergen 2018 Perseus: A Bioinformatics Platform for Integrative Analysis of Proteomics Data in Cancer Research book chapter In: von Stechow, L. (eds) Cancer Systems Biology. Methods in Molecular Biology, vol 1711. Humana Press, New York, NY https://doi.org/10.1007/978-1-4939-7493-1_7 13.94417 13.96356 40.73139 40.74667 13.953698333333334 40.73912166666667 2013-06-04T00:00:00 2013-09-16T00:00:00 not specified ASSEMBLE_Plus Association of European Marine Biological Laboratories Expanded https://doi.org/10.3030/730984 Sorbonne Université, Paris, France https://ror.org/02en5vm52 European Commission EC https://commission.europa.eu/index_en https://doi.org/10.13039/501100000780 730984 Association of European Marine Biological Laboratories Expanded https://doi.org/10.3030/730984 Castello_Aragonese_A1 40.73139 13.96306 Castello Aragonese 2013-06-04T00:00:00 2013-09-16T00:00:00 Experiment EXP Acidified site - inside the venting area Castello_Aragonese_A2 40.73139 13.96306 Castello Aragonese 2013-06-04T00:00:00 2013-09-16T00:00:00 Experiment EXP Acidified site - inside the venting area Castello_Aragonese_A3 40.73194 13.96356 Castello Aragonese 2013-06-04T00:00:00 2013-09-16T00:00:00 Experiment EXP Acidified site - inside the venting area Punta_San_Pietro_C1 40.74667 13.94417 Punta San Pietro 2013-06-04T00:00:00 2013-09-16T00:00:00 Experiment EXP Control site - outside the venting area Punta_San_Pietro_C2 40.74667 13.94417 Punta San Pietro 2013-06-04T00:00:00 2013-09-16T00:00:00 Experiment EXP Control site - outside the venting area Punta_San_Pietro_C3 40.74667 13.94417 Punta San Pietro 2013-06-04T00:00:00 2013-09-16T00:00:00 Experiment EXP Control site - outside the venting area 127.9 CC-BY-4.0 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/ Complete list of proteins identified in annelids Platynereis spp. from control and treatment conditions. Proteomic data were analysed in the free software Perseus (Tyanova et al., 2016) and MetaboAnalyst 4.0 (Chong et al., 2019). The proteomics analysis of Platynereis spp. led to the identification of 663 proteins, 51 of which remained for statistical analysis after the filtering step (removal of proteins with <60 % valid values). Table provides information about the mean LFQ (Label Free Quantification) intensities calculated for each protein as the best estimate satisfying all the pair-wise peptide comparisons for all analyzed experimental groups, Q-value-Andromeda output, Score-Andromeda score for the best associated MS/MS spectrum, Intensity: intenstity of the ions, MS/MS Count is spectral counting of the ions, here distinct peptide sequences are counted. Modified forms or different charges are counted as one peptide, name of proteins, number of identified peptides, UniProt accession number. (---: not applicable) CurationLevelC Enhanced curation https://wiki.pangaea.de/wiki/Curation_levels citable author37319 author38168 author53250 author53251 author61041 author61042 author61043 author88140 author97372 author97441 author97442 author97444 author97445 author97446 award1548 curlevel30 event3034827 event3034828 event3034829 event3034830 event3034831 event3034832 funder20653 geocode1599 geocode1600 geocode1601 inst20622 journal16727 journal17293 license21 method7423 project4800 ref116747 ref116757 ref116758 refds953826 term71878 term71879 topotype1