de.pangaea.dataset953832 und dataset PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact 2026-05-19T09:06:22Z https://doi.pangaea.de/10.1594/PANGAEA.953832 <gco:CharacterString>Proteomic profiles of Platynereis spp. collected from inside and outside the CO2 vent (Ischia, Italy) and used in a reciprocal transplant experiment in September 2013</gco:CharacterString> 2023-02-08T12:47:12 publication https://doi.org/10.1594/PANGAEA.953832 Turner, Lucy M
lucy.m.turner@plymouth.ac.uk
https://orcid.org/0000-0002-9052-9498 information author Madeira, Diana
dianabmar@gmail.com
https://orcid.org/0000-0002-2435-9283 information author Ricevuto, Elena
elenaricevuto@gmail.com
author Massa Gallucci, Alexia
alexia.massagallucci@gmail.com
author Sommer, Ulf
ulfsommer1@gmail.com
author Viant, Mark R
m.viant@bham.ac.uk
https://orcid.org/0000-0001-5898-4119 information author Dineshram, Ramadoss
dinbiot@gmail.com
author Gambi, Maria Cristina
gambimc@gmail.com
https://orcid.org/0000-0002-0168-776X information author Calosi, Piero
Piero_Calosi@uqar.ca
https://orcid.org/0000-0003-3378-2603 information author PANGAEA
info@pangaea.de
https://www.pangaea.de/ information publisher tableDigital Platynereis spp. were collected via snorkelling or scuba from either inside (40°43′53″N, 13°57′47″E) (stations A1-A3) or outside (40°43'33.33"N, 13°57'36.38"E and 40°44′48″N, 13°56′39″E) (stations C1-C3) the carbon dioxide (CO2) vent on the island of Ischia (Italy) and used in a reciprocal transplant experiment. The effect of exposure to high or low partial pressures of CO2 (pCO2) conditions on the proteome of worms from different pCO2 regimes was investigated to understand the effect of exposure to different pCO2 conditions on the cellular physiological response. This experiment was conducted between 04/09/2013 and 16/09/2013. The experiment was staggered during this time so all worms could be processed. After five days exposure to either low or high CO2 conditions worms were snap frozen in liquid nitrogen and shipped to the University of Hong Kong for proteomic analysis which was finalised on 02/08/2015. Proteomic profiles of worms were characterised using a liquid chromatography-mass spectrometry/mass spectrometry triple time of flight (LC-MS/ MS Triple TOF) approach. completed ASSEMBLE_Plus Association of European Marine Biological Laboratories Expanded theme <gco:CharacterString>PANGAEA Project List</gco:CharacterString> 1995-01-01 creation PANGAEA
info@pangaea.de
https://www.pangaea.de/ information pointOfContact copyright copyright CC-BY-4.0: Creative Commons Attribution 4.0 International textTable und geoscientificInformation 13.94417 13.96356 40.73139 40.74667 2013-06-04T00:00:00 2013-09-16T00:00:00 Complete list of proteins identified in annelids Platynereis spp. from control and treatment conditions. Proteomic data were analysed in the free software Perseus (Tyanova et al., 2016) and MetaboAnalyst 4.0 (Chong et al., 2019). The proteomics analysis of Platynereis spp. led to the identification of 663 proteins, 51 of which remained for statistical analysis after the filtering step (removal of proteins with <60 % valid values). Table provides information about the mean LFQ (Label Free Quantification) intensities calculated for each protein as the best estimate satisfying all the pair-wise peptide comparisons for all analyzed experimental groups, Q-value-Andromeda output, Score-Andromeda score for the best associated MS/MS spectrum, Intensity: intenstity of the ions, MS/MS Count is spectral counting of the ions, here distinct peptide sequences are counted. Modified forms or different charges are counted as one peptide, name of proteins, number of identified peptides, UniProt accession number. (---: not applicable) application/vnd.openxmlformats-officedocument.spreadsheetml.sheet unknown https://download.pangaea.de/dataset/953832/files/Total_protein_list_platy_020815_11012023.xlsx download dataset The data set was checked for completeness, correctness, and consistency of metainformation. Validity of used methods was checked and - if applicable - precision and range of data. EVENT LABEL: Castello_Aragonese_A1 * LATITUDE: 40.731390 * LONGITUDE: 13.963060 * DATE/TIME START: 2013-06-04T00:00:00 * DATE/TIME END: 2013-09-16T00:00:00 * LOCATION: Castello Aragonese * METHOD/DEVICE: Experiment Acidified site - inside the venting area 2013-06-04T00:00:00 EVENT LABEL: Castello_Aragonese_A2 * LATITUDE: 40.731390 * LONGITUDE: 13.963060 * DATE/TIME START: 2013-06-04T00:00:00 * DATE/TIME END: 2013-09-16T00:00:00 * LOCATION: Castello Aragonese * METHOD/DEVICE: Experiment Acidified site - inside the venting area 2013-06-04T00:00:00 EVENT LABEL: Castello_Aragonese_A3 * LATITUDE: 40.731940 * LONGITUDE: 13.963560 * DATE/TIME START: 2013-06-04T00:00:00 * DATE/TIME END: 2013-09-16T00:00:00 * LOCATION: Castello Aragonese * METHOD/DEVICE: Experiment Acidified site - inside the venting area 2013-06-04T00:00:00 EVENT LABEL: Punta_San_Pietro_C1 * LATITUDE: 40.746670 * LONGITUDE: 13.944170 * DATE/TIME START: 2013-06-04T00:00:00 * DATE/TIME END: 2013-09-16T00:00:00 * LOCATION: Punta San Pietro * METHOD/DEVICE: Experiment Control site - outside the venting area 2013-06-04T00:00:00 EVENT LABEL: Punta_San_Pietro_C2 * LATITUDE: 40.746670 * LONGITUDE: 13.944170 * DATE/TIME START: 2013-06-04T00:00:00 * DATE/TIME END: 2013-09-16T00:00:00 * LOCATION: Punta San Pietro * METHOD/DEVICE: Experiment Control site - outside the venting area 2013-06-04T00:00:00 EVENT LABEL: Punta_San_Pietro_C3 * LATITUDE: 40.746670 * LONGITUDE: 13.944170 * DATE/TIME START: 2013-06-04T00:00:00 * DATE/TIME END: 2013-09-16T00:00:00 * LOCATION: Punta San Pietro * METHOD/DEVICE: Experiment Control site - outside the venting area 2013-06-04T00:00:00 Supplement to <gco:CharacterString>Sibling species differently distributed around a CO2 vent show transplantation proteomic remodelling, while displaying metabolomic signatures associated with their origin</gco:CharacterString> 2025-01-01 publication https://doi.org/10.1038/s41598-025-18913-y Turner, Lucy M
lucy.m.turner@plymouth.ac.uk
https://orcid.org/0000-0002-9052-9498 information author Madeira, Diana
dianabmar@gmail.com
https://orcid.org/0000-0002-2435-9283 information author Ricevuto, Elena
elenaricevuto@gmail.com
author Massa Gallucci, Alexia
alexia.massagallucci@gmail.com
author Sommer, Ulf
ulfsommer1@gmail.com
author Viant, Mark R
m.viant@bham.ac.uk
https://orcid.org/0000-0001-5898-4119 information author Dineshram, Ramadoss
dinbiot@gmail.com
author Gambi, Maria Cristina
gambimc@gmail.com
https://orcid.org/0000-0002-0168-776X information author Calosi, Piero
Piero_Calosi@uqar.ca
https://orcid.org/0000-0003-3378-2603 information author documentDigital Scientific Reports 15(1) 33604 Related to <gco:CharacterString>Using MetaboAnalyst 4.0 for Comprehensive and Integrative Metabolomics Data Analysis</gco:CharacterString> 2019-01-01 publication https://doi.org/10.1002/cpbi.86 Chong, Jasmine author Wishart, David S author Xia, Jianguo author documentDigital Current Protocols in Bioinformatics 68 e86 Related to <gco:CharacterString>Environmental conditions inside and outside the CO2 vent (Ischia, Italy) before and during a reciprocal transplant experiment with Platynereis spp. in September 2013</gco:CharacterString> 2023-01-01 publication https://doi.org/10.1594/PANGAEA.953826 Turner, Lucy M
lucy.m.turner@plymouth.ac.uk
https://orcid.org/0000-0002-9052-9498 information author Madeira, Diana
dianabmar@gmail.com
https://orcid.org/0000-0002-2435-9283 information author Ricevuto, Elena
elenaricevuto@gmail.com
author Massa Gallucci, Alexia
alexia.massagallucci@gmail.com
author Sommer, Ulf
ulfsommer1@gmail.com
author Viant, Mark R
m.viant@bham.ac.uk
https://orcid.org/0000-0001-5898-4119 information author Dineshram, Ramadoss
dinbiot@gmail.com
author Gambi, Maria Cristina
gambimc@gmail.com
https://orcid.org/0000-0002-0168-776X information author Calosi, Piero
Piero_Calosi@uqar.ca
https://orcid.org/0000-0003-3378-2603 information author documentDigital Related to <gco:CharacterString>Perseus: A Bioinformatics Platform for Integrative Analysis of Proteomics Data in Cancer Research</gco:CharacterString> 2018-01-01 publication https://doi.org/10.1007/978-1-4939-7493-1_7 Tyanova, Stefka author Cox, Juergen author documentDigital In: von Stechow, L. (eds) Cancer Systems Biology. Methods in Molecular Biology, vol 1711. Humana Press, New York, NY