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Cameron, Louise P; Reymond, Claire E; Bijma, Jelle; Büscher, Janina; de Beer, Dirk; Guillermic, Maxence; Eagle, Robert A; Gunnell, John; Müller-Lundin, Fiona; Schmidt-Grieb, Gertraud M; Westfield, Isaac T; Westphal, Hildegard; Ries, Justin B (2022): Seawater carbonate chemistry and calcification rates of tropical zooxanthellate corals (Stylophora pistillata, Pocillopora damicornis, and Seriatopora hystrix) and cold-water coral (Lophelia pertusa) [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.952475

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Abstract:
Corals are globally important calcifiers that exhibit complex responses to anthropogenic warming and acidification. Although coral calcification is supported by high seawater pH, photosynthesis by the algal symbionts of zooxanthellate corals can be promoted by elevated pCO2. To investigate the mechanisms underlying corals' complex responses to global change, three species of tropical zooxanthellate corals (Stylophora pistillata, Pocillopora damicornis, and Seriatopora hystrix) and one species of asymbiotic cold-water coral (Desmophyllum pertusum, syn. Lophelia pertusa) were cultured under a range of ocean acidification and warming scenarios. Under control temperatures, all tropical species exhibited increased calcification rates in response to increasing pCO2. However, the tropical species' response to increasing pCO2 flattened when they lost symbionts (i.e., bleached) under the high-temperature treatments—suggesting that the loss of symbionts neutralized the benefit of increased pCO2 on calcification rate. Notably, the cold-water species that lacks symbionts exhibited a negative calcification response to increasing pCO2, although this negative response was partially ameliorated under elevated temperature. All four species elevated their calcifying fluid pH relative to seawater pH under all pCO2 treatments, and the magnitude of this offset (Δ[H+]) increased with increasing pCO2. Furthermore, calcifying fluid pH decreased along with symbiont abundance under thermal stress for the one species in which calcifying fluid pH was measured under both temperature treatments. This observation suggests a mechanistic link between photosymbiont loss ('bleaching') and impairment of zooxanthellate corals' ability to elevate calcifying fluid pH in support of calcification under heat stress. This study supports the assertion that thermally induced loss of photosymbionts impairs tropical zooxanthellate corals' ability to cope with CO2-induced ocean acidification.
Keyword(s):
Acid-base regulation; Animalia; Benthic animals; Benthos; Bottles or small containers/Aquaria (<20 L); Calcification/Dissolution; Cnidaria; Laboratory experiment; Laboratory strains; Lophelia pertusa; Mortality/Survival; Not applicable; Other studied parameter or process; Pocillopora damicornis; Seriatopora hystrix; Single species; Stylophora pistillata; Temperature
Supplement to:
Cameron, Louise P; Reymond, Claire E; Bijma, Jelle; Büscher, Janina; de Beer, Dirk; Guillermic, Maxence; Eagle, Robert A; Gunnell, John; Müller-Lundin, Fiona; Schmidt-Grieb, Gertraud M; Westfield, Isaac T; Westphal, Hildegard; Ries, Justin B (2022): Impacts of Warming and Acidification on Coral Calcification Linked to Photosymbiont Loss and Deregulation of Calcifying Fluid pH. Journal of Marine Science and Engineering, 10(8), 1106, https://doi.org/10.3390/jmse10081106
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-12-19.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeRies, Justin BStudy
TreatmentTreatRies, Justin BpCO2
TreatmentTreatRies, Justin BTemperature
Experiment durationExp durationdaysRies, Justin B
Species, unique identificationSpecies UIDRies, Justin B
Species, unique identification (URI)Species UID (URI)Ries, Justin B
Species, unique identification (Semantic URI)Species UID (Semantic URI)Ries, Justin B
FragmentsFragm#Ries, Justin Bcoral fragments per treatment at the start of the experiment
FragmentsFragm#Ries, Justin Bcoral fragments per treatment at the end of the experiment
10 MortalityMortality%Ries, Justin B
11 Buoyant massM buoyantmgRies, Justin B
12 Mass, standard deviationMass std dev±Ries, Justin BBuoyant
13 Dry massDry mgRies, Justin Bstart
14 Dry mass, standard deviationDry m std dev±Ries, Justin Bstart
15 Dry massDry mgRies, Justin Bend
16 Dry mass, standard deviationDry m std dev±Ries, Justin Bend
17 Calcification rateCalc rate%/dayRies, Justin B
18 Calcification rate, standard deviationCalc rate std dev±Ries, Justin B
19 Calcifying fluid, pHCF pHRies, Justin B
20 Calcifying fluid, pH, standard deviationCF pH std dev±Ries, Justin B
21 ScoreScoreRies, Justin B
22 Score, standard deviationScore std dev±Ries, Justin B
23 Nitrate[NO3]-µmol/lRies, Justin B
24 Nitrate, standard errorNO3 std e±Ries, Justin B
25 Phosphate[PO4]3-µmol/lRies, Justin B
26 Phosphate, standard errorPO4 std e±Ries, Justin B
27 Ammonium[NH4]+µmol/lRies, Justin B
28 Ammonium, standard error[NH4]+ std e±Ries, Justin B
29 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetppmvRies, Justin B
30 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air), standard errorpCO2water_SST_wet std e±Ries, Justin B
31 pHpHRies, Justin Bseawater scale
32 pH, standard errorpH std e±Ries, Justin Bseawater scale
33 Carbonate ion[CO3]2-µmol/lRies, Justin B
34 Carbonate ion, standard error[CO3]2- std e±Ries, Justin B
35 Bicarbonate[HCO3]-µmol/lRies, Justin B
36 Bicarbonate ion, standard error[HCO3]- std e±Ries, Justin B
37 Carbon dioxideCO2µmol/lRies, Justin B
38 Carbon dioxide, standard errorCO2 std e±Ries, Justin B
39 Aragonite saturation stateOmega ArgRies, Justin B
40 Aragonite saturation state, standard errorOmega Arg std e±Ries, Justin B
41 SalinitySalRies, Justin B
42 Salinity, standard errorSal std e±Ries, Justin B
43 Temperature, waterTemp°CRies, Justin B
44 Temperature, water, standard errorT std e±Ries, Justin B
45 pHpHRies, Justin BNBS scale
46 pH, standard errorpH std e±Ries, Justin BNBS scale
47 Alkalinity, totalATµmol/lRies, Justin B
48 Alkalinity, total, standard errorAT std e±Ries, Justin B
49 Carbon, inorganic, dissolvedDICµmol/lRies, Justin B
50 Carbon, inorganic, dissolved, standard errorDIC std e±Ries, Justin B
51 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 pHpHYang, YanCalculated using seacarb after Nisumaa et al. (2010)total scale
53 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
57 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
58 Carbon, inorganic, dissolvedDICµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
59 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
60 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
61 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1378 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(Study)

Treat
(pCO2)

Treat
(Temperature)

Exp duration [days]

Species UID

Species UID (URI)

Species UID (Semantic URI)

Fragm [#]
(coral fragments per treatment...)

Fragm [#]
(coral fragments per treatment...)
10 
Mortality [%]
11 
M buoyant [mg]
12 
Mass std dev [±]
(Buoyant)
13 
Dry m [g]
(start)
14 
Dry m std dev [±]
(start)
15 
Dry m [g]
(end)
16 
Dry m std dev [±]
(end)
17 
Calc rate [%/day]
18 
Calc rate std dev [±]
19 
CF pH
20 
CF pH std dev [±]
21 
Score
22 
Score std dev [±]
23 
[NO3]- [µmol/l]
24 
NO3 std e [±]
25 
[PO4]3- [µmol/l]
26 
PO4 std e [±]
27 
[NH4]+ [µmol/l]
28 
[NH4]+ std e [±]
29 
pCO2water_SST_wet [ppmv]
30 
pCO2water_SST_wet std e [±]
31 
pH
(seawater scale)
32 
pH std e [±]
(seawater scale)
33 
[CO3]2- [µmol/l]
34 
[CO3]2- std e [±]
35 
[HCO3]- [µmol/l]
36 
[HCO3]- std e [±]
37 
CO2 [µmol/l]
38 
CO2 std e [±]
39 
Omega Arg
40 
Omega Arg std e [±]
41 
Sal
42 
Sal std e [±]
43 
Temp [°C]
44 
T std e [±]
45 
pH
(NBS scale)
46 
pH std e [±]
(NBS scale)
47 
AT [µmol/l]
48 
AT std e [±]
49 
DIC [µmol/l]
50 
DIC std e [±]
51 
CSC flag
52 
pH
(total scale)
53 
CO2 [µmol/kg]
54 
fCO2water_SST_wet [µatm]
55 
pCO2water_SST_wet [µatm]
56 
[HCO3]- [µmol/kg]
57 
[CO3]2- [µmol/kg]
58 
DIC [µmol/kg]
59 
AT [µmol/kg]
60 
Omega Arg
61 
Omega Cal
laboratoryAmbientAmbient60Stylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698210550178335310.9180.69011.0100.7580.0130.0128.8250.1684.6910.1982.721.630.480.210.740.5346688.110.02334921333312.30.25.40.137.870.0628.290.018.270.01291549248040158.0611.74454.80456.202094.64314.402420.792845.414.967.42
laboratoryAmbientAmbient60Pocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:2069539905137197317.0703.31817.2893.4480.0200.0168.9360.5174.5290.9452.721.630.480.210.740.5346688.110.02334921333312.30.25.40.137.870.0628.290.018.270.01291549248040158.0611.74454.80456.202094.64314.402420.792845.414.967.42
laboratoryAmbientAmbient60Seriatopora hystrixmarinespecies.orgurn:lsid:marinespecies.org:taxname:20697311827142440910.8740.70211.0100.7580.0490.0158.5220.2983.6780.1972.721.630.480.210.740.5346688.110.02334921333312.30.25.40.137.870.0628.290.018.270.01291549248040158.0611.74454.80456.202094.64314.402420.792845.414.967.42
laboratoryAmbientAmbient30Lophelia pertusamarinespecies.orgurn:lsid:marinespecies.org:taxname:1351618807411277511.6544.36311.6764.3720.0060.0069.0800.45812.230.524.071.4434.5617.35451248.200.0424423267410720.01.03.70.334.980.028.860.038.070.0132451482938125158.1817.64387.07388.582613.25229.512860.413159.303.475.47
laboratoryAmbientHigh60Stylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982116453549504111.6641.64611.6791.6630.0020.0058.6570.2513.6690.5051.471.020.270.080.400.2849998.060.023201120173612.30.35.20.235.630.0831.720.068.240.01277454235044158.0411.09459.30460.661982.12307.112300.312715.355.037.45
laboratoryAmbientHigh60Pocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:206953100100313517991.471.020.270.080.400.2849998.060.023201120173612.30.35.20.235.630.0831.720.068.240.01277454235044158.0411.09459.30460.661982.12307.112300.312715.355.037.45
laboratoryAmbientHigh60Seriatopora hystrixmarinespecies.orgurn:lsid:marinespecies.org:taxname:206973880141563310.8591.08810.7501.1240.0180.0064.1170.2411.471.020.270.080.400.2849998.060.023201120173612.30.35.20.235.630.0831.720.068.240.01277454235044158.0411.09459.30460.661982.12307.112300.312715.355.037.45
laboratoryAmbientHigh30Lophelia pertusamarinespecies.orgurn:lsid:marinespecies.org:taxname:1351618808479366213.3577.11913.3617.1030.0010.00415.411.292.790.8539.9218.03494168.210.0428925277511119.01.04.40.435.130.0312.170.048.130.0234421613083134158.1816.79410.75412.302713.33272.833002.953352.634.156.49
laboratoryModerateAmbient60Stylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:206982131302320120412.0772.25412.3832.5470.0370.0398.5940.3175.0050.3771.110.990.190.040.120.10925157.850.01217624243524.60.43.50.135.440.0527.880.028.040.01293946264544157.9019.59742.10744.392341.13225.412586.132873.583.625.43
laboratoryModerateAmbient60Pocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:2069538803115230813.6703.88113.8723.8790.0250.0108.5560.4505.4470.4081.110.990.190.040.120.10925157.850.01217624243524.60.43.50.135.440.0527.880.028.040.01293946264544157.9019.59742.10744.392341.13225.412586.132873.583.625.43
laboratoryModerateAmbient60Seriatopora hystrixmarinespecies.orgurn:lsid:marinespecies.org:taxname:2069739811128739610.8510.75810.8750.7630.0320.0158.2620.1633.2760.2161.110.990.190.040.120.10925157.850.01217624243524.60.43.50.135.440.0527.880.028.040.01293946264544157.9019.59742.10744.392341.13225.412586.132873.583.625.43
laboratoryModerateAmbient30Lophelia pertusamarinespecies.orgurn:lsid:marinespecies.org:taxname:1351619908337273513.1104.30113.11214.2880.0020.0067.9620.10412.120.484.301.5132.1316.071096997.870.04121927948945.04.01.80.134.960.039.070.037.800.02308093296093157.8440.18887.57891.052731.41110.382881.972998.811.672.63
laboratoryModerateHigh60Stylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698210730227092211.5051.26211.5601.3040.0080.0078.1640.0614.4090.3402.231.410.190.030.220.21885127.870.01265424683522.00.44.30.135.990.0630.830.028.120.01308340275537157.8819.85807.69810.102422.11253.252695.223016.104.116.11
laboratoryModerateHigh60Pocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:206953184782522112611.8271.09111.8741.1530.0060.0084.0800.1002.231.410.190.030.220.21885127.870.01265424683522.00.44.30.135.990.0630.830.028.120.01308340275537157.8819.85807.69810.102422.11253.252695.223016.104.116.11
laboratoryModerateHigh60Seriatopora hystrixmarinespecies.orgurn:lsid:marinespecies.org:taxname:2069738625114644510.0460.26910.1530.2650.0190.0084.0650.2672.231.410.190.030.220.21885127.870.01265424683522.00.44.30.135.990.0630.830.028.120.01308340275537157.8819.85807.69810.102422.11253.252695.223016.104.116.11
laboratoryModerateHigh30Lophelia pertusamarinespecies.orgurn:lsid:marinespecies.org:taxname:13516175298454208912.1012.21412.1232.2460.0050.00815.011.121.900.5337.6317.341079607.860.03140828359541.02.02.10.135.230.0612.520.047.820.0231631063016101157.8436.83911.75915.162770.35130.482937.663080.841.983.10
laboratoryHighAmbient60Stylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698210100172139610.9540.74211.7880.9180.1240.0438.3950.3045.6630.1191.491.040.120.020.280.1728071197.420.0190326977774.33.21.40.035.750.0528.170.027.620.01290781286182157.4168.402613.592621.662645.3283.232796.942841.911.332.00
laboratoryHighAmbient60Pocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:20695398113692247114.6404.15615.3804.6160.0650.0228.2400.3745.6510.3141.491.040.120.020.280.1728071197.420.0190326977774.33.21.40.035.750.0528.170.027.620.01290781286182157.4168.402613.592621.662645.3283.232796.942841.911.332.00
laboratoryHighAmbient60Seriatopora hystrixmarinespecies.orgurn:lsid:marinespecies.org:taxname:2069738538128336710.6890.65911.4800.7840.1280.1787.9060.2674.4440.2291.491.040.120.020.280.1728071197.420.0190326977774.33.21.40.035.750.0528.170.027.620.01290781286182157.4168.402613.592621.662645.3283.232796.942841.911.332.00
laboratoryHighAmbient30Lophelia pertusamarinespecies.orgurn:lsid:marinespecies.org:taxname:1351618807401305711.6394.80711.4964.728-0.0360.0127.5370.0158.111.703.401.2630.1414.6828642227.420.04526303469127.08.00.80.135.010.028.830.027.390.02315780321469157.40119.042609.152619.422966.1743.833129.043073.540.661.04
laboratoryHighHigh60Stylophora pistillatamarinespecies.orgurn:lsid:marinespecies.org:taxname:20698211110220044411.8070.85811.9040.9290.0140.0187.9700.1944.9970.2331.981.180.140.020.160.1031941357.420.02113430305479.53.41.80.135.680.0630.930.027.690.01329056322357157.4172.272942.292951.082976.82104.793153.883219.451.712.54
laboratoryHighHigh60Pocillopora damicornismarinespecies.orgurn:lsid:marinespecies.org:taxname:20695394566455513322.23711.83622.21911.840-0.0020.0104.8770.2641.981.180.140.020.160.1031941357.420.02113430305479.53.41.80.135.680.0630.930.027.690.01329056322357157.4172.272942.292951.082976.82104.793153.883219.451.712.54
laboratoryHighHigh60Seriatopora hystrixmarinespecies.orgurn:lsid:marinespecies.org:taxname:2069738363122338910.8600.64210.9190.6260.0100.0053.7890.0961.981.180.140.020.160.1031941357.420.02113430305479.53.41.80.135.680.0630.930.027.690.01329056322357157.4172.272942.292951.082976.82104.793153.883219.451.712.54
laboratoryHighHigh30Lophelia pertusamarinespecies.orgurn:lsid:marinespecies.org:taxname:1351617707194329811.3135.18611.2325.148-0.0220.00810.392.162.470.9845.5323.2731672027.420.03605305881118.08.00.90.135.400.0512.670.037.400.02319887323585157.40108.822709.232719.382990.1551.693150.663114.620.791.23