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Santoro, Mariano; Hassenrück, Christiane; Labrenz, Matthias; Hagemann, Martin (2022): Experimental phosphate limitation in Nodularia spumigena CCY9414 [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.951078

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Published: 2022-11-18DOI registered: 2023-01-17

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Abstract:
Nodularia spumigena is a toxic, filamentous cyanobacterium capable to fix atmospheric nitrogen, which is often dominating cyanobacterial bloom events in the Baltic Sea and other aquatic systems worldwide. Phosphate (P) limitation has been considered as one environmental parameter that is somehow promoting the establishment of cyanobacterial mass developments. In the present study, we analyzed the response of Nodularia spumigena strain CCY9914 towards strong phosphorus limitation in an experimental approach. Pre-experimental and experimental incubations were performed at the Department of Plant Physiology (University of Rostock, Germany). Specifically, cultures were incubated under P-replete and P-deplete conditions for 21 days. The P-replete medium was composed as follows: 33% ASNIII and 67% BG11 medium mixture (as described by Hagemann et al., 2019), with 0.02 g L-1 K2HPO4 in the modified ASNIII (Rippka et al., 1979) and 0.00078 mg L-1 K2HPO4 in BG11 medium modified with 20 mM TES buffer to pH 8 (Rippka et al., 1979). Conversely, the P-deplete medium did not contain any additional P. Samples were collected after 3 hours (day 0), 7, 14 and 21 days from the start of the experiment to assess the variation of the following physiological parameters: biomass increase estimated by dry weight measurements and polyphosphate accumulation measured according to Martin et al. (2014). Additionally, ortho-phosphate and ammonium concentrations were measured in the medium to assess nutrient conditions during the course of the experiment. The experiment was repeated two times. During the second iteration of the experiment, samples from d7 and d14 were used for differential gene expression analysis (RNA-seq data available on Gene Expression Omnibus (GEO) accession GSE213384).
Keyword(s):
bloom; cyanobacteria; Experiment; gene expression; Nodularia spumigena; phosphate limitation; polyphosphate
Supplement to:
Santoro, Mariano; Hassenrück, Christiane; Labrenz, Matthias; Hagemann, Martin (2023): Acclimation of Nodularia spumigena CCY9414 to inorganic phosphate limitation – Identification of the P-limitation stimulon via RNA-seq. Frontiers in Microbiology, 13, 1082763, https://doi.org/10.3389/fmicb.2022.1082763
Further details:
Hagemann, Martin; Möke, F; Springer, A; Westermann, L; Frank, Markus; Wasmund, Norbert; Bauwe, Hermann (2019): Cyanobacterium Nodularia spumigena strain CCY9414 accumulates polyphosphate under long-term P-limiting conditions. Aquatic Microbial Ecology, 82(3), 265-274, https://doi.org/10.3354/ame01896
Martin, Patrick; Dyhrman, Sonya T; Lomas, Michael W; Van Mooy, Benjamin A S (2014): Accumulation and enhanced cycling of polyphosphate by Sargasso Sea plankton in response to low phosphorus. Proceedings of the National Academy of Sciences of the United States of America, 111(22), 8089-8094, https://doi.org/10.1073/pnas.1321719111
Stanier, Roger Y; Deruelles, Josette; Rippka, Rosmarie; Herdman, Michael; Waterbury, John B (1979): Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria. Microbiology, 111(1), 1-61, https://doi.org/10.1099/00221287-111-1-1
Funding:
Leibniz-Wissenschafts Campus Phosphorforschung Rostock, grant/award no. W19/2018: P.IV.3 - Cyanobloom
Comment:
The study has been funded by the Leibniz Science Campus Phosphorus Research Rostock with additional financial support from the University of Rostock and the Leibniz-Institut für Ostseeforschung Warnemünde (IOW).
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
1ExperimentExpSantoro, Mariano
2Sampling date/time, experimentDate/time sampling expSantoro, Mariano
3Sample IDSample IDSantoro, Mariano
4Type of studyStudy typeSantoro, Mariano
5LaboratoryLabSantoro, Mariano
6SpeciesSpeciesSantoro, Mariano
7Species, unique identificationSpecies UIDSantoro, Mariano
8Species, unique identification (URI)Species UID (URI)Santoro, Mariano
9Species, unique identification (Semantic URI)Species UID (Semantic URI)Santoro, Mariano
10StrainStrainSantoro, Mariano
11Treatment: temperatureT:temp°CSantoro, Mariano
12Treatment: light:dark cycleT:L:Dhh:hhSantoro, Mariano
13Treatment: light intensityT:Ioµmol/m2/sSantoro, Mariano
14Treatment: nutrientsT:nutrientsSantoro, MarianoPhosphate conditions
15Time in daysTime ddaysSantoro, MarianoSampling time relative to the start of the experiment
16SalinitySalSantoro, Mariano
17Phosphate[PO4]3-µmol/lSantoro, MarianoContinuous Segmented Flow Analyzer, SEAL Analytical, QuAAtro39In medium
18Ammonium[NH4]+µmol/lSantoro, MarianoContinuous Segmented Flow Analyzer, SEAL Analytical, QuAAtro39In medium
19Nodularia spumigena, biomass as dry weightN. spumigena biomg/mLSantoro, Mariano
20Polyphosphate/biomass as dry weight ratioPolyP/biomµmol/gSantoro, MarianoPlate reader,TECAN, Infinite F200 PRO
21Accession number, geneticsAccess no genSantoro, Mariano
Change history:
2025-11-18T09:51:22 – Link to culture collection with accession number=ULC 200421 no longer available, was deleted.
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
826 data points

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