Citation:

PANGAEA.950758

Name: Experiment on an artificial phytoplankton community in response to high CO2: relative importance assay and calculated relative importance
Published: 2022-11-15
License: https://creativecommons.org/licenses/by/4.0/
Keywords: Abundance; C. affinis; Coccolithophores; Diatom; Eco-evolution; E. huxleyi; experimental data; partition; size

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Abstract:

This dataset includes information specific to the Eco-Evo assay applied to a long-term community selection experiment after 80,186, and 288 days. The community contained Emiliania huxleyi and Chaetoceros affinis (details about Species and genotypes used can be found in doi:10.1098/rsbl.2016.0774). The long-term community selection phase to ambient and high CO2 (400 and 1250ppm, respectively) started on the 10th of January 2017, details about the sorting phase in semi-continuous batch cycles can be found in doi:10.1594/PANGAEA.887780. Here, the raw data from the subsequent Eco-Evo assay are presented, as well as the calculated relative importance of species and genotype sorting.The first eco-evo Assay (after 80 days) previously served to validate the new method (https://doi.org/10.1111/1365-2435.13923) and Abundance (column 8) of Time 80 (first 25 rows) and the calculated relative contribution to total changes of that timepoint (column 28- first 4 rows) are also included in the previous dataset (https://doi.org/10.1594/PANGAEA.896220). Abundance-weighted means are calculated as the sum of each species' cell abundances multiplied with their respective trait, divided by the total cell abundance. Relative Importance of eco-evolutionary changes to the total change are calculated following the formula given in Hattich et al 2022 (https://doi.org/10.1111/1365-2435.13923).

Keyword(s):

Abundance; C. affinis; Coccolithophores; Diatom; Eco-evolution; E. huxleyi; experimental data; partition; size

Project(s):

Priority Programme 1704 DynaTrait: Flexibility Matters: Interplay between Trait Diversity and Ecological Dynamics Using Aquatic Communities as Model Systems (SPP1704)

Funding:

German Research Foundation (DFG), grant/award no. MA5058/2-1

German Research Foundation (DFG), grant/award no. RE1708/17-1

Parameter(s):

#	Name	Short Name	Unit	Principal Investigator	Method/Device	Comment
1	Number of batch	Batch no	#	Hattich, Giannina S I		batch cycle selection
2	Time in days	Time	days	Hattich, Giannina S I		Time in Sortingphase before start of the Assay
3	Treatment	Treat		Hattich, Giannina S I		CO2 selection: ambient=400ppm; high=1120ppm
4	Treatment	Treat		Hattich, Giannina S I		Genotype Composition (present in the assay following composition found under ambient/high selection CO2)
5	Treatment	Treat		Hattich, Giannina S I		Species Composition (reassambled in the assay to mirrow mean species compisitions found under ambientient/high selection CO2)
6	Treatment	Treat		Hattich, Giannina S I		Assay CO2 (ambient=400ppm; high=1120ppm)
7	Treatment	Treat		Hattich, Giannina S I		Assay Community
8	Identification	ID		Hattich, Giannina S I		Assay Number
9	Replicate	Repl		Hattich, Giannina S I		Origin_from Replicate in SortingPhase
10	Cell biovolume	Cell biovol	µm³	Hattich, Giannina S I	Mean values	abundance weighted mean
11	Chaetoceros affinis	C. affinis	#/ml	Hattich, Giannina S I
12	Emiliania huxleyi	E. huxleyi	#/ml	Hattich, Giannina S I
13	Chaetoceros affinis, biovolume	C. affinis biovol	µm³/ml	Hattich, Giannina S I
14	Emiliania huxleyi, biovolume	E. huxleyi biovol	µm³/ml	Hattich, Giannina S I
15	Biovolume	Biovol	µm³/ml	Hattich, Giannina S I		total
16	Chaetoceros affinis, cell biovolume	C. affinis cell biovol	µm³	Hattich, Giannina S I
17	Emiliania huxleyi, cell biovolume	E. huxleyi cell biovol	µm³	Hattich, Giannina S I
18	Chaetoceros affinis, surface area	C. affinis SA	µm²	Hattich, Giannina S I
19	Emiliania huxleyi, surface area	E. huxleyi SA	µm²	Hattich, Giannina S I
20	Chaetoceros affinis, surface area	C. affinis SA	µm²	Hattich, Giannina S I
21	Cell surface area/cell volume ratio	Cell SA/cell vol	1/µm	Hattich, Giannina S I	Mean values	Abundance weighted surface:volume ratio
22	Emiliania huxleyi, growth rate	E. huxleyi µ	1/day	Hattich, Giannina S I
23	Chaetoceros affinis, growth rate	C. affinis µ	1/day	Hattich, Giannina S I
24	Growth rate	µ	1/day	Hattich, Giannina S I	Mean values
25	Carbon, total, particulate/Nitrogen, total, particulate ratio	TPC/TPN		Hattich, Giannina S I
26	Treatment	Treat		Hattich, Giannina S I		Assay
27	Abundance per volume	Abund v	#/ml	Hattich, Giannina S I	Calculated	TotalEffect_abundance
28	Cell biovolume	Cell biovol	µm³	Hattich, Giannina S I	Calculated	TotalEffect_Size
29	Number percentage	N perc	%	Hattich, Giannina S I	Calculated	Relative_Importance ABUNDANCE
30	Number percentage	N perc	%	Hattich, Giannina S I	Calculated	Relative_Importance SIZE

License:

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Status:

Curation Level: Enhanced curation (CurationLevelC)

Size:

1779 data points

Data

Download dataset as tab-delimited text — use the following character encoding:

1 Batch no [#] (batch cycle selection)	2 Time [days] (Time in Sortingphase before s...)	3 Treat (CO2 selection: ambient=400ppm...)	4 Treat (Genotype Composition (present...)	5 Treat (Species Composition (reassamb...)	6 Treat (Assay CO2 (ambient=400ppm; hi...)	7 Treat (Assay Community)	8 ID (Assay Number)	9 Repl (Origin_from Replicate in Sort...)	10 Cell biovol [µm³] (abundance weighted mean, Mean...)	11 C. affinis [#/ml]	12 E. huxleyi [#/ml]	13 C. affinis biovol [µm³/ml]	14 E. huxleyi biovol [µm³/ml]	15 Biovol [µm³/ml] (total)	16 C. affinis cell biovol [µm³]	17 E. huxleyi cell biovol [µm³]	18 C. affinis SA [µm²]	19 E. huxleyi SA [µm²]	20 C. affinis SA [µm²]	21 Cell SA/cell vol [1/µm] (Abundance weighted surface:vo...)	22 E. huxleyi µ [1/day]	23 C. affinis µ [1/day]	24 µ [1/day] (Mean values)	25 TPC/TPN	26 Treat (Assay)	27 Abund v [#/ml] (TotalEffect_abundance, Calcul...)	28 Cell biovol [µm³] (TotalEffect_Size, Calculated)	29 N perc [%] (Relative_Importance ABUNDANCE...)	30 N perc [%] (Relative_Importance SIZE, Cal...)
10	80	ambient	ambient	ambient	ambient	Control_ambient	10	3	45.39	4338	27103	1051440.00	80767.50	1132207.61	242.37	13.86	239.71	27.90	239.71	1.26	0.85	1.01	0.87	8.13
10	80	ambient	ambient	ambient	ambient	Control_ambient	15	24	48.41	3519	36138	1415926.00	107907.00	1523832.00	402.38	13.94	324.18	28.01	324.18	1.12	0.83	1.01	0.84	9.17
10	80	ambient	ambient	ambient	ambient	Control_ambient	29	14	53.15	5482	40472	1809701.00	125543.00	1935244.00	330.13	15.63	293.10	30.20	293.10	1.16	0.85	0.92	0.86	8.62
10	80	ambient	ambient	ambient	ambient	Control_ambient	34	6	75.44	4278	26126	1509313.00	100744.00	1610057.00	352.84	30.02	307.00	46.70	307.00	1.10	0.81	0.95	0.83	8.66
10	80	ambient	ambient	ambient	ambient	Control_ambient	37	21	40.94	4981	44867	1276949.00	143215.00	1420163.00	256.34	17.03	251.90	32.00	251.90	1.32	0.88	1.01	0.89	8.64
10	80	ambient	ambient	high	ambient	Eco	9	14	255.83	4256	9303	3296182.35	30551.39	3326733.75	774.54	18.54	522.90	33.90	522.90	0.73	0.86	0.84	0.85	7.24
10	80	ambient	ambient	high	ambient	Eco	14	6	122.09	5559	6510	1299963.30	24126.00	1324089.00	233.86	26.65	238.20	43.10	238.20	1.09	0.82	0.95	0.88	6.79
10	80	ambient	ambient	high	ambient	Eco	16	24	125.20	3079	3937	810813.64	12598.00	823411.00	263.33	17.16	261.60	32.20	261.60	1.06	0.72	0.94	0.82	6.95
10	80	ambient	ambient	high	ambient	Eco	22	3	121.24	4234	8006	1362880.68	24560.90	1387442.00	321.91	15.12	304.86	29.57	304.86	1.03	0.89	0.96	0.91	6.65
10	80	ambient	ambient	high	ambient	Eco	24	21	146.05	4619	10161	2038520.75	28714.52	2067235.27	441.38	11.82	338.50	25.09	338.50	0.84	0.88	0.95	0.90	6.93
10	80	high	high	high	ambient	EcoEvo	6	16	191.30	3948	6972	1992861.81	20734.22	2013596.00	504.81	13.77	373.96	27.79	373.96	0.80	0.80	0.91	0.84	6.65
10	80	high	high	high	ambient	EcoEvo	23	5	83.79	4690	12140	1225540.56	37319.00	1262859.60	261.31	15.21	246.69	29.69	246.69	1.08	0.85	1.03	0.90	7.24
10	80	high	high	high	ambient	EcoEvo	32	23	118.84	5108	10755	1746356.33	31296.04	1777652.36	341.89	12.90	305.67	26.60	305.67	0.98	0.90	1.01	0.94	5.90
10	80	high	high	high	ambient	EcoEvo	38	13	134.81	4586	7566	1501859.78	24603.48	1526463.25	327.52	18.01	293.77	33.22	293.77	0.98	0.83	0.94	0.87	5.84
10	80	high	high	high	ambient	EcoEvo	40	30	101.69	4723	9809	1314732.66	31055.12	1345787.78	278.37	16.62	271.04	31.49	271.04	1.08	0.88	1.02	0.92	6.71
10	80	high	high	high	high	Effect_novel	8	23	246.80	5443	4289	2338760.52	13037.54	2351798.06	429.66	14.71	333.54	29.03	333.54	0.81	0.77	1.02	0.91	6.83
10	80	high	high	high	high	Effect_novel	18	30	204.29	4970	5674	2096648.61	16863.82	2113512.43	421.82	13.75	342.68	27.75	342.68	0.86	0.80	1.03	0.91	6.41
10	80	high	high	high	high	Effect_novel	25	13	190.19	5322	5454	1990994.63	14933.88	2005928.50	374.08	10.75	318.37	23.55	318.37	0.89	0.78	0.96	0.87	6.74
10	80	high	high	high	high	Effect_novel	26	16	290.76	4140	3937	2275321.27	12936.24	2288257.51	549.57	18.58	402.76	33.92	402.76	0.77	0.72	0.92	0.82	6.92
10	80	high	high	high	high	Effect_novel	28	5	152.01	3667	7214	1575091.43	19866.68	1594958.11	429.49	10.94	358.00	23.83	358.00	0.90	0.77	0.99	0.85	6.77
10	80	high	high	ambient	ambient	Evo	3	16	87.66	3898	26371	2202589.96	84280.66	2286870.62	565.01	17.09	433.14	32.09	433.14	0.96	0.78	0.96	0.80	7.75
10	80	high	high	ambient	ambient	Evo	4	23	39.02	4399	51643	1307346.36	164843.05	1472189.41	297.22	17.03	285.20	32.01	285.20	1.33	0.91	1.03	0.92	8.87
10	80	high	high	ambient	ambient	Evo	11	30	63.28	3931	40838	1909742.84	143259.39	2053002.24	485.78	22.60	364.00	38.66	364.00	1.06	0.87	1.03	0.88	8.76
10	80	high	high	ambient	ambient	Evo	12	13	65.08	4245	24173	1471689.51	74985.00	1546674.51	346.71	15.63	316.64	30.23	316.64	1.12	0.78	0.97	0.81	7.58
10	80	high	high	ambient	ambient	Evo	20	5	65.64	3739	31865	1738522.94	105089.31	1843612.26	464.99	18.78	361.31	34.17	361.31	1.04	0.77	1.04	0.80	9.27
21	168	ambient	ambient	ambient	ambient	Control_ambient	10	3	44.82	3552	68124	1978833.78	221948.74	2200782.52	557.12	18.11	429.09	33.35	429.09	1.18	0.83	0.95	0.83	6.78
21	168	ambient	ambient	ambient	ambient	Control_ambient	15	24	51.67	6213	136615	4766374.75	453287.63	5219662.39	767.15	19.13	492.12	34.59	492.12	1.05	0.92	1.04	0.92	6.04
21	168	ambient	ambient	ambient	ambient	Control_ambient	29	14	95.59	4052	75083	6094401.94	251078.07	6345480.01	1503.96	19.58	764.76	35.13	764.76	0.76	0.86	1.06	0.87	5.50
21	168	ambient	ambient	ambient	ambient	Control_ambient	34	6	47.72	3398	79112	1635852.63	301891.42	1937744.06	481.42	29.10	403.20	45.75	403.20	1.27	0.79	1.13	0.81	5.23
21	168	ambient	ambient	ambient	ambient	Control_ambient	37	21	33.05	3519	115738	1334742.98	405545.73	1740288.72	379.31	22.53	358.60	38.57	358.60	1.45	0.90	1.05	0.91	3.79
21	168	ambient	ambient	high	ambient	Eco	9	14	75.24	3860	26737	1900327.73	81868.48	1982196.21	492.34	15.03	394.43	29.46	394.43	1.00	0.80	0.95	0.82	6.72
21	168	ambient	ambient	high	ambient	Eco	14	6	100.43	3431	59700	4646861.84	225905.80	4872767.64	1354.40	28.37	709.67	44.98	709.67	0.81	0.84	1.03	0.85	6.27
21	168	ambient	ambient	high	ambient	Eco	16	24	127.02	5009	73984	8666757.13	242668.76	8909425.88	1730.26	18.48	853.36	33.80	853.36	0.68	0.91	0.90	0.91	8.69
21	168	ambient	ambient	high	ambient	Eco	22	3	147.97	4261	46515	6509567.19	160662.57	6670229.76	1527.65	21.58	774.72	37.48	774.72	0.67	0.86	0.88	0.86	7.33
21	168	ambient	ambient	high	ambient	Eco	24	21	125.23	3876	53291	5895891.30	189928.15	6085819.45	1521.01	23.70	779.87	39.90	779.87	0.72	0.88	0.96	0.88	7.49
21	168	high	high	high	ambient	EcoEvo	6	16	32.46	4937	73984	1378312.59	231275.17	1609587.76	279.15	15.99	319.99	30.70	319.99	1.50	0.87	0.92	0.88	5.95
21	168	high	high	high	ambient	EcoEvo	23	5	135.87	5025	40472	5333884.65	138413.05	5472297.70	1061.38	20.94	609.26	36.75	609.26	0.74	0.75	0.95	0.78	7.33
21	168	high	high	high	ambient	EcoEvo	32	23	74.66	4322	47980	2738648.79	172440.00	2911088.79	633.70	24.31	424.63	40.58	424.63	0.97	0.87	1.02	0.88	6.60
21	168	high	high	high	ambient	EcoEvo	38	13	33.57	4657	58052	1057884.01	188901.53	1246785.54	227.16	18.04	269.08	33.26	269.08	1.51	0.91	0.95	0.91	8.81
21	168	high	high	high	ambient	EcoEvo	40	30	40.54	5042	50178	1225975.86	169499.67	1395475.54	243.16	20.18	251.24	35.85	251.24	1.37	0.87	0.93	0.87	7.80
21	168	high	high	high	high	Effect_novel	8	23	56.38	4355	39739	1886250.16	121840.18	2008090.35	433.16	15.09	372.40	29.53	372.40	1.12	0.84	1.03	0.86	6.21
21	168	high	high	high	high	Effect_novel	18	30	138.71	6015	50910	6842810.80	173399.60	7016210.41	1137.60	20.69	638.73	36.45	638.73	0.72	0.87	0.96	0.88	6.94
21	168	high	high	high	high	Effect_novel	25	13	83.20	6043	60067	4315466.64	201342.99	4516809.64	714.17	19.72	467.73	35.30	467.73	0.90	0.91	0.99	0.92	8.04
21	168	high	high	high	high	Effect_novel	26	16	79.75	5410	85705	5633448.05	284025.29	5917473.34	1041.24	19.06	606.64	34.50	606.64	0.86	0.90	0.94	0.90	6.42
21	168	high	high	high	high	Effect_novel	28	5	142.75	4707	40472	5672247.50	134446.83	5806694.33	1205.19	19.20	664.54	34.67	664.54	0.70	0.75	0.94	0.77	6.07
21	168	high	high	ambient	ambient	Evo	3	16	31.52	4668	101088	612584.96	375843.57	988428.53	131.23	26.91	174.54	43.43	174.54	1.56	0.83	1.02	0.84	6.00
21	168	high	high	ambient	ambient	Evo	4	23	37.34	4305	80211	1096686.19	293571.48	1390257.67	254.74	25.67	260.91	42.08	260.91	1.43	0.86	1.13	0.87	5.00
21	168	high	high	ambient	ambient	Evo	11	30	77.38	4498	86437	4932014.15	310828.15	5242842.30	1096.59	24.35	621.50	40.62	621.50	0.90	0.86	1.01	0.87	6.71
21	168	high	high	ambient	ambient	Evo	12	13	104.29	6598	108046	9713539.91	368438.54	10081978.45	1472.21	20.76	765.17	36.53	765.17	0.75	0.91	1.11	0.92	7.81
21	168	high	high	ambient	ambient	Evo	20	5	103.44	4019	64462	5329610.70	240570.83	5570181.53	1326.02	27.22	710.25	43.76	710.25	0.80	0.74	1.02	0.75	6.90
36	288	ambient	ambient	ambient	ambient	Control_ambient	10	3	48.00	3546	137347	2711209.79	524941.14	3236150.93	764.50	29.23	488.10	45.89	488.10	1.19	0.91	0.97	0.91	5.04
36	288	ambient	ambient	ambient	ambient	Control_ambient
36	288	ambient	ambient	ambient	ambient	Control_ambient	29	14	25.40	3184	146137	1332027.98	464717.12	1796745.10	418.42	16.84	325.25	31.77	325.25	1.50	0.91	0.86	0.91	4.02
36	288	ambient	ambient	ambient	ambient	Control_ambient	34	6	50.00	3178	85338	2663005.52	290491.97	2953497.48	837.95	20.65	523.99	36.40	523.99	1.08	0.84	0.96	0.84	5.60
36	288	ambient	ambient	ambient	ambient	Control_ambient	37	21	65.09	3744	84972	4010073.86	289755.05	4299828.92	1070.97	20.76	619.71	36.53	619.71	0.94	0.87	0.89	0.87	3.54
36	288	ambient	ambient	high	ambient	Eco	9	14	25.25	3332	116104	337656.26	410080.02	747736.28	101.34	23.07	146.91	39.19	146.91	1.67	0.86	0.95	0.86	5.23
36	288	ambient	ambient	high	ambient	Eco	14	6	41.02	3249	157491	2097880.74	597207.76	2695088.49	645.60	28.55	434.79	45.17	434.79	1.29	0.91	1.05	0.91	4.66
36	288	ambient	ambient	high	ambient	Eco
36	288	ambient	ambient	high	ambient	Eco	22	3	23.05	3574	153096	1590076.86	448878.60	2038955.46	444.92	13.20	339.93	27.01	339.93	1.48	0.90	1.06	0.91	3.52
36	288	ambient	ambient	high	ambient	Eco	24	21	29.28	4806	127092	1890355.36	393222.57	2283577.93	393.37	15.51	312.24	30.07	312.24	1.38	0.91	1.02	0.92	5.61
36	288	high	high	high	ambient	EcoEvo	6	16	13.47	4096	162619	1003018.37	397441.15	1400459.52	244.86	7.64	227.90	18.77	227.90	1.77	0.90	0.98	0.90	3.48
36	288	high	high	high	ambient	EcoEvo
36	288	high	high	high	ambient	EcoEvo	32	23	31.44	3618	183862	1580897.73	653078.42	2233976.14	436.97	23.46	334.32	39.64	334.32	1.44	0.90	0.97	0.90	3.33
36	288	high	high	high	ambient	EcoEvo	38	13	38.70	4415	124528	2539397.79	417169.34	2956567.13	575.16	19.68	405.76	35.26	405.76	1.24	0.86	1.01	0.87	3.66
36	288	high	high	high	ambient	EcoEvo	40	30	55.00	4074	80943	3297363.32	258209.14	3555572.46	809.32	17.00	513.56	31.97	513.56	1.00	0.80	0.97	0.81	6.61
36	288	high	high	high	high	Effect_novel	8	23	22.81	4915	160055	1760376.56	460959.30	2221335.87	358.13	12.51	294.32	26.06	294.32	1.49	0.88	1.02	0.89	3.12
36	288	high	high	high	high	Effect_novel	18	30	30.12	3645	80211	1357342.81	243038.68	1600381.49	372.35	14.57	300.22	28.84	300.22	1.35	0.80	0.96	0.81	5.45
36	288	high	high	high	high	Effect_novel	25	13	26.55	2931	147602	980376.26	500667.67	1481043.93	334.53	20.43	279.06	36.15	279.06	1.54	0.89	0.94	0.89	3.71
36	288	high	high	high	high	Effect_novel	26	16	32.77	4784	119034	1407808.43	415429.61	1823238.03	294.30	22.26	256.10	38.26	256.10	1.42	0.86	1.01	0.86	4.32
36	288	high	high	high	high	Effect_novel
36	288	high	high	ambient	ambient	Evo	3	16	20.34	3700	136248	1352863.74	375500.75	1728364.49	365.60	10.96	298.41	23.86	298.41	1.53	0.89	0.88	0.89	3.53
36	288	high	high	ambient	ambient	Evo	4	23	15.00	2375	189722	743004.98	533119.71	1276124.68	312.81	11.62	268.01	24.81	268.01	1.81	0.93	0.81	0.92	3.52
36	288	high	high	ambient	ambient	Evo	11	30	36.09	3282	123429	1672512.60	438668.03	2111180.63	509.53	23.50	371.24	39.68	371.24	1.34	0.88	0.85	0.88	3.70
36	288	high	high	ambient	ambient	Evo	12	13	22.15	2381	185693	607775.58	616502.30	1224277.88	255.29	19.16	232.52	34.63	232.52	1.68	0.94	0.82	0.94	4.29
36	288	high	high	ambient	ambient	Evo
	80																								Ecology	-29438	164.15	79.62	41.72
	80																								Evolution	-29438	164.15	1.27	4.72
	80																								EcoXEvo	-29438	164.15	7.43	16.24
	80																								Unexplained	-29438	164.15	11.68	37.32
	288																								Ecology	13933	-19.00
	288																								Evolution	13933	-19.00
	288																								EcoXEvo	13933	-19.00
	288																								Unexplained	13933	-19.00
	168																								Ecology	-38397	46.00	71.70	33.40
	168																								Evolution	-38397	46.00	10.40	8.90
	168																								EcoXEvo	-38397	46.00	15.00	37.40
	168																								Unexplained	-38397	46.00	2.90	20.20