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Wannicke, Nicola; Endres, Sonja; Engel, Anja; Grossart, Hans-Peter; Unger, Juliane; Voss, Maren (2012): Seawater carbonate chemistry and growth, production and nitrogen cycling of Nodularia spumigena [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.950700

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Abstract:
Heterocystous cyanobacteria of the genus Nodularia form extensive blooms in the Baltic Sea and contribute substantially to the total annual primary production. Moreover, they dispense a large fraction of new nitrogen to the ecosystem when inorganic nitrogen concentration in summer is low. Thus, it is of ecological importance to know how Nodularia will react to future environmental changes, in particular to increasing carbon dioxide (CO2) concentrations and what consequences there might arise for cycling of organic matter in the Baltic Sea. Here, we determined carbon (C) and dinitrogen (N2) fixation rates, growth, elemental stoichiometry of particulate organic matter and nitrogen turnover in batch cultures of the heterocystous cyanobacterium Nodularia spumigena under low (median 315 μatm), mid (median 353 μatm), and high (median 548 μatm) CO2 concentrations. Our results demonstrate an overall stimulating effect of rising pCO2 on C and N2 fixation, as well as on cell growth. An increase in pCO2 during incubation days 0 to 9 resulted in an elevation in growth rate by 84 ± 38% (low vs. high pCO2) and 40 ± 25% (mid vs. high pCO2), as well as in N2 fixation by 93 ± 35% and 38 ± 1%, respectively. C uptake rates showed high standard deviations within treatments and in between sampling days. Nevertheless, C fixation in the high pCO2 treatment was elevated compared to the other two treatments by 97% (high vs. low) and 44% (high vs. mid) at day 0 and day 3, but this effect diminished afterwards. Additionally, elevation in carbon to nitrogen and nitrogen to phosphorus ratios of the particulate biomass formed (POC : POP and PON : POP) was observed at high pCO2. Our findings suggest that rising pCO2 stimulates the growth of heterocystous diazotrophic cyanobacteria, in a similar way as reported for the non-heterocystous diazotroph Trichodesmium. Implications for biogeochemical cycling and food web dynamics, as well as ecological and socio-economical aspects in the Baltic Sea are discussed.
Keyword(s):
Bacteria; Biomass/Abundance/Elemental composition; Bottles or small containers/Aquaria (<20 L); Cyanobacteria; Growth/Morphology; Laboratory experiment; Laboratory strains; Nodularia spumigena; Not applicable; Other metabolic rates; Pelagos; Phytoplankton; Primary production/Photosynthesis; Single species
Related to:
Wannicke, Nicola; Endres, Sonja; Engel, Anja; Grossart, Hans-Peter; Unger, Juliane; Voss, Maren (2012): Response of Nodularia spumigena to pCO2 - Part 1: Growth, production and nitrogen cycling. Biogeosciences, 9(8), 2973-2988, https://doi.org/10.5194/bg-9-2973-2012
Original version:
Wannicke, Nicola; Endres, Sonja; Engel, Anja; Grossart, Hans-Peter; Unger, Juliane; Voss, Maren (2012): Biotic and abiotic parameters and cynobacteria abundance during an experimental set-up with varying pCO2 conditions. PANGAEA, https://doi.org/10.1594/PANGAEA.792919
Further details:
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Coverage:
Date/Time Start: 2010-03-29T00:00:00 * Date/Time End: 2010-04-13T00:00:00
Comment:
In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-11-15.
Parameter(s):
#NameShort NameUnitPrincipal InvestigatorMethod/DeviceComment
TypeTypeWannicke, NicolaStudy
Species, unique identificationSpecies UIDWannicke, Nicola
Species, unique identification (URI)Species UID (URI)Wannicke, Nicola
Species, unique identification (Semantic URI)Species UID (Semantic URI)Wannicke, Nicola
DATE/TIMEDate/TimeWannicke, NicolaGeocode
Incubation durationInc durdaysWannicke, Nicola
TreatmentTreatWannicke, NicolapCO2
Phosphate[PO4]3-µmol/lWannicke, NicolaSpectrophotometer Hitachi U-2000
Phosphate, standard deviation[PO4]3- std dev±Wannicke, NicolaSpectrophotometer Hitachi U-2000
10 Nitrogen, inorganic, dissolvedDINµmol/lWannicke, NicolaSpectrophotometer Hitachi U-2000
11 Nitrogen, inorganic, dissolved, standard deviationDIN std dev±Wannicke, NicolaSpectrophotometer Hitachi U-2000
12 Chlorophyll aChl aµg/lWannicke, NicolaFluorometry (TURNER, 10-AU-005)
13 Chlorophyll a, standard deviationChl a std dev±Wannicke, NicolaFluorometry (TURNER, 10-AU-005)
14 Bacteria, abundanceBact abund109 #/cm3Wannicke, NicolaCounting by flow cytometer
15 Bacteria, abundance, standard deviationBact abund std dev±Wannicke, NicolaCounting by flow cytometer
16 Carbon, organic, dissolvedDOCµmol/lWannicke, NicolaTOC analyzer (Shimadzu)
17 Carbon, organic, dissolved, standard deviationDOC std dev±Wannicke, NicolaTOC analyzer (Shimadzu)
18 Nitrogen, organic, dissolvedDONµmol/lWannicke, NicolaTOC analyzer (Shimadzu)
19 Nitrogen, organic, standard deviationN org std dev±Wannicke, NicolaTOC analyzer (Shimadzu)
20 Phosphorus, organic, dissolvedDOPµmol/lWannicke, Nicola
21 Phosphorus, organic, standard deviationP org std dev±Wannicke, Nicola
22 SalinitySalWannicke, Nicolain psu
23 Temperature, technicalT tech°CWannicke, Nicola
24 AbundanceAbund#/lWannicke, NicolaMicroscopyfilament abundance
25 Abundance, standard deviationAbund std dev±Wannicke, NicolaMicroscopyfilament abundance
26 Carbon, organic, particulatePOCµmol/lWannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
27 Carbon, organic, particulate, standard deviationPOC std dev±Wannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
28 Nitrogen, organic, particulatePONµmol/lWannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
29 Nitrogen, organic, particulate, standard deviationPON std dev±Wannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
30 Phosphorus, organic, particulatePOPµmol/lWannicke, NicolaMarsXpress (CEM)
31 Particulate organic phosphorus, standard deviationPOP std dev±Wannicke, NicolaMarsXpress (CEM)
32 Carbon fixation rateC fixµmol/l/hWannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
33 Carbon fixation rate, standard deviationC fix std dev±Wannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometerC fix
34 Nitrogen fixation rateN2 fixnmol/l/hWannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
35 Nitrogen fixation rate, standard deviationN2 fix std dev±Wannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
36 Carbon fixation rate, per particulate organic carbonC fix/POCµmol/µmol/hWannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
37 Carbon fixation rate, standard deviationC fix std dev±Wannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometerC fix/POC
38 Nitrogen fixation rate, per particulate organic carbonN2 fix/POCnmol/µmol/hWannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometer
39 Nitrogen fixation rate, standard deviationN2 fix std dev±Wannicke, NicolaCarlo Erba EA 1108 + Thermo Finnigan Delta S mass-spectrometerN2 fix/POC
40 pHpHWannicke, NicolaPotentiometrictotal scale
41 pH, standard deviationpH std dev±Wannicke, NicolaPotentiometrictotal scale
42 Carbon, inorganic, dissolvedDICµmol/kgWannicke, NicolaColorimetric
43 Carbon, inorganic, dissolved, standard deviationDIC std dev±Wannicke, NicolaColorimetric
44 Alkalinity, totalATµmol/kgWannicke, NicolaCalculated using CO2SYS
45 Alkalinity, total, standard deviationAT std dev±Wannicke, NicolaCalculated using CO2SYS
46 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmWannicke, NicolaCalculated using CO2SYS
47 Partial pressure of carbon dioxide, standard deviationpCO2 std dev±Wannicke, NicolaCalculated using CO2SYS
48 Carbonate system computation flagCSC flagYang, YanCalculated using seacarb after Nisumaa et al. (2010)
49 Carbon dioxideCO2µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
50 Fugacity of carbon dioxide (water) at sea surface temperature (wet air)fCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
51 Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)pCO2water_SST_wetµatmYang, YanCalculated using seacarb after Nisumaa et al. (2010)
52 Bicarbonate ion[HCO3]-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
53 Carbonate ion[CO3]2-µmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
54 Alkalinity, totalATµmol/kgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
55 Aragonite saturation stateOmega ArgYang, YanCalculated using seacarb after Nisumaa et al. (2010)
56 Calcite saturation stateOmega CalYang, YanCalculated using seacarb after Nisumaa et al. (2010)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
636 data points

Data

Download dataset as tab-delimited text — use the following character encoding:


Type
(Study)

Species UID

Species UID (URI)

Species UID (Semantic URI)

Date/Time

Inc dur [days]

Treat
(pCO2)

[PO4]3- [µmol/l]
(Spectrophotometer Hitachi U-2000)

[PO4]3- std dev [±]
(Spectrophotometer Hitachi U-2000)
10 
DIN [µmol/l]
(Spectrophotometer Hitachi U-2000)
11 
DIN std dev [±]
(Spectrophotometer Hitachi U-2000)
12 
Chl a [µg/l]
(Fluorometry (TURNER, 10-AU-005))
13 
Chl a std dev [±]
(Fluorometry (TURNER, 10-AU-005))
14 
Bact abund [109 #/cm3]
(Counting by flow cytometer)
15 
Bact abund std dev [±]
(Counting by flow cytometer)
16 
DOC [µmol/l]
(TOC analyzer (Shimadzu))
17 
DOC std dev [±]
(TOC analyzer (Shimadzu))
18 
DON [µmol/l]
(TOC analyzer (Shimadzu))
19 
N org std dev [±]
(TOC analyzer (Shimadzu))
20 
DOP [µmol/l]
21 
P org std dev [±]
22 
Sal
(in psu)
23 
T tech [°C]
24 
Abund [#/l]
(filament abundance, Microscopy)
25 
Abund std dev [±]
(filament abundance, Microscopy)
26 
POC [µmol/l]
(Carlo Erba EA 1108 + Thermo F...)
27 
POC std dev [±]
(Carlo Erba EA 1108 + Thermo F...)
28 
PON [µmol/l]
(Carlo Erba EA 1108 + Thermo F...)
29 
PON std dev [±]
(Carlo Erba EA 1108 + Thermo F...)
30 
POP [µmol/l]
(MarsXpress (CEM))
31 
POP std dev [±]
(MarsXpress (CEM))
32 
C fix [µmol/l/h]
(Carlo Erba EA 1108 + Thermo F...)
33 
C fix std dev [±]
(C fix, Carlo Erba EA 1108 + T...)
34 
N2 fix [nmol/l/h]
(Carlo Erba EA 1108 + Thermo F...)
35 
N2 fix std dev [±]
(Carlo Erba EA 1108 + Thermo F...)
36 
C fix/POC [µmol/µmol/h]
(Carlo Erba EA 1108 + Thermo F...)
37 
C fix std dev [±]
(C fix/POC, Carlo Erba EA 1108...)
38 
N2 fix/POC [nmol/µmol/h]
(Carlo Erba EA 1108 + Thermo F...)
39 
N2 fix std dev [±]
(N2 fix/POC, Carlo Erba EA 110...)
40 
pH
(total scale, Potentiometric)
41 
pH std dev [±]
(total scale, Potentiometric)
42 
DIC [µmol/kg]
(Colorimetric)
43 
DIC std dev [±]
(Colorimetric)
44 
AT [µmol/kg]
(Calculated using CO2SYS)
45 
AT std dev [±]
(Calculated using CO2SYS)
46 
pCO2water_SST_wet [µatm]
(Calculated using CO2SYS)
47 
pCO2 std dev [±]
(Calculated using CO2SYS)
48 
CSC flag
(Calculated using seacarb afte...)
49 
CO2 [µmol/kg]
(Calculated using seacarb afte...)
50 
fCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
51 
pCO2water_SST_wet [µatm]
(Calculated using seacarb afte...)
52 
[HCO3]- [µmol/kg]
(Calculated using seacarb afte...)
53 
[CO3]2- [µmol/kg]
(Calculated using seacarb afte...)
54 
AT [µmol/kg]
(Calculated using seacarb afte...)
55 
Omega Arg
(Calculated using seacarb afte...)
56 
Omega Cal
(Calculated using seacarb afte...)
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-03-29T00:000low pCO20.290.020.220.310.740.080.4310.254306.518.616.020.070.340.049.123.34489536792531.2102.3624.4690.3760.2050.0401.220.1917.190.8843.388.610.570.048.020.021651.98.91724.26.4472.929.9915.93468.57470.101558.9677.011729.311.322.29
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-03-29T00:000medium pCO20.320.080.280.160.870.090.5610.222295.623.918.021.170.330.069.123.33848278937731.8641.4584.4610.1890.2290.0521.920.1521.196.4560.128.630.630.197.950.011656.83.61713.42.8561.08.7918.87555.07556.881571.8466.091718.131.131.97
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-03-29T00:000high pCO20.340.020.220.020.710.040.3140.022330.176.317.671.740.380.069.123.33208947890623.1800.7893.1860.2790.1860.0501.950.0420.470.0084.333.240.880.057.930.031676.72.71730.32.6590.735.3920.02588.95590.871592.7263.951734.171.091.90
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-01T00:003low pCO20.050.020.410.353.040.120.2680.082270.68.715.610.010.270.029.122.773483318141977.7643.49410.4080.5530.4290.0321.330.16205.7429.5917.122.492.570.448.160.031607.410.21709.73.2330.126.3911.21324.43325.501496.3999.801717.261.702.96
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-01T00:003medium pCO20.030.010.240.034.040.790.4950.168297.88.515.350.140.240.029.122.78465075492487.23612.77611.9681.5600.4750.0142.260.46296.1982.0125.882.463.901.128.090.031617.511.41703.53.5388.836.0913.36386.67387.941517.9786.171708.791.472.55
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-01T00:003high pCO20.040.000.220.023.460.070.4330.165296.81.616.181.560.280.079.122.781581033807257.1183.9118.0740.5610.3590.0901.920.13297.8513.9033.674.325.360.327.940.021667.91.91720.55.1576.823.3919.70570.13572.011584.5263.681725.441.081.89
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-07T00:009low pCO20.010.010.280.273.382.270.5140.156308.719.615.441.790.270.089.123.1114264017266092.72936.11214.8654.7790.7950.2141.750.3317.786.0010.802.530.210.058.220.041570.414.61690.85.0276.727.199.38274.30275.201448.46112.571697.831.923.35
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-07T00:009medium pCO20.020.020.200.125.150.230.5410.239319.917.215.910.820.250.099.123.11313500240299159.9913.27127.2100.3980.9310.1452.640.2231.563.6516.542.190.200.038.180.031581.12.81690.95.9305.320.3910.41304.56305.551466.73103.961697.061.783.09
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-07T00:009high pCO20.010.000.140.157.270.420.5340.385322.66.115.810.440.230.049.123.12737000135264179.35433.87227.6005.4350.9560.0590.990.4082.134.289.751.000.450.098.070.021620.75.31702.33.8412.216.9913.93407.39408.731522.9883.791708.541.432.49
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-13T00:0015low pCO20.030.010.200.041.490.280.6620.322318.726.814.650.740.240.079.123.4131213319050884.99224.08315.3684.2310.9260.2501.260.9113.611.2012.818.780.180.018.200.041568.011.41683.322.6291.829.399.77288.04288.981449.46108.781690.531.863.24
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-13T00:0015medium pCO20.020.010.210.153.050.450.2200.033323.716.415.130.490.190.029.123.4165893340508798.50731.80917.1375.6521.0070.0641.790.3915.191.7018.874.420.180.048.140.011595.94.91696.72.0339.612.5911.51339.32340.431487.1997.211702.491.672.89
laboratoryNodularia spumigenamarinespecies.orgurn:lsid:marinespecies.org:taxname:1605662010-04-13T00:0015high pCO20.020.010.100.004.411.090.6100.524306.015.816.790.410.210.049.123.42402767406401116.85027.29719.6995.0651.0490.0581.520.5420.502.6813.284.430.230.108.030.061626.921.11702.26.7452.982.2915.29450.83452.301533.7977.821706.151.332.32