Kapetanović, Damir; Gavrilović, Ana; Purgar, Marija; Hackenberger, Branimir K; Kurtović, Božidar; Haberle, Ines; Pečar Ilić, Jadranka; Geček, Sunčana; Hackenberger, Domagoj K; Djerdj, Tamara; Bavčević, Lav; Jusup, Marko; Žunić, Jakov; Barac, Fran; Šoštarić Vulić, Zvjezdana; Klanjscek, Tin (2022): AqADAPT: Physicochemical parameters and Vibrio spp. abundance in water samples gathered in the Adriatic Sea [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.950280
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Abstract:
Vibrio spp. are naturally occurring aquatic bacteria, highly adaptive and freely associated with a variety of biotic and abiotic surfaces including water, sediment, fish, shellfish, algae, and zooplankton. Although Vibrio spp. comprise a minor portion of the total microbial population, they are one of the key constituents of aquatic heterotrophic bacterial groups. More than 140 described species from the genus Vibrio can have a strong biotic impact, and consequently pose severe health risks (e.g. Vibrio cholerae) and economic losses (vibriosis infection). The dataset AqADAPT contains Vibrio spp. abundance and measurements of physicochemical parameters of seawater (temperature, salinity, total dissolved solids, pH, dissolved oxygen, conductivity, transparency, total nitrogen, total phosphorus, total particulate matter, particulate organic matter, particulate inorganic matter, nitrogen dioxide, nitrate and ammonia) gathered from the Adriatic Sea. Water sampling was conducted with the Niskin bottle at different depths (0.5m, 6m, 12m and the sea bottom) near floating cage fish farms (Cres and Vrgada) and corresponding control locations. In situ measurements were determined using YSI ProDSS Multiparameter Digital Water Quality Meter. Vibrio spp. abundance from water samples was determined by counting the total number of visible colonies that exhibited relief from the plate surface from the Thiosulphate Citrate Bile Salt Sucrose (TCBS) (Difco™, BD) agar plates. The sampling period covers seasonal measurements between 2019 and 2021.
Related to:
Purgar, Marija; Kapetanović, Damir; Geček, Sunčana; Marn, Nina; Haberle, Ines; Hackenberger, Branimir K; Gavrilović, Ana; Pečar Ilić, Jadranka; Hackenberger, Domagoj K; Djerdj, Tamara; Ćaleta, Bruno; Klanjscek, Tin (2022): Investigating the Ability of Growth Models to Predict In Situ Vibrio spp. Abundances. Microorganisms, 10(9), 1765, https://doi.org/10.3390/microorganisms10091765
Further details:
Paterson, Kristy J; Schreider, Maria J; Zimmerman, Kenneth D (2003): Anthropogenic effects on seston quality and quantity and the growth and survival of Sydney rock oyster (Saccostrea glomerata) in two estuaries in NSW, Australia. Aquaculture, 221(1-4), 407-426, https://doi.org/10.1016/S0044-8486(03)00027-9
Project(s):
Funding:
Coverage:
Median Latitude: 44.364392 * Median Longitude: 15.000590 * South-bound Latitude: 43.838741 * West-bound Longitude: 14.346833 * North-bound Latitude: 45.024167 * East-bound Longitude: 15.521110
Date/Time Start: 2019-07-01T00:00:00 * Date/Time End: 2021-08-25T00:00:00
Minimum DEPTH, water: 0.5 m * Maximum DEPTH, water: 49.0 m
Event(s):
AqADAPT_1 * Latitude: 43.838741 * Longitude: 15.521110 * Date/Time Start: 2019-07-01T00:00:00 * Date/Time End: 2021-08-24T00:00:00 * Elevation: -49.0 m * Location: Cres - Fish Farm * Method/Device: Bottle, Niskin (NIS)
AqADAPT_2 * Latitude: 45.024167 * Longitude: 14.357972 * Date/Time Start: 2019-07-01T00:00:00 * Date/Time End: 2021-08-25T00:00:00 * Elevation: -49.0 m * Location: Cres - Control * Method/Device: Bottle, Niskin (NIS)
AqADAPT_3 * Latitude: 43.842757 * Longitude: 15.517415 * Date/Time Start: 2020-07-16T00:00:00 * Date/Time End: 2021-08-25T00:00:00 * Elevation: -23.0 m * Location: Vrgada - Fish Farm * Method/Device: Bottle, Niskin (NIS)
Parameter(s):
| # | Name | Short Name | Unit | Principal Investigator | Method/Device | Comment |
|---|---|---|---|---|---|---|
| 1 | Event label | Event | Klanjscek, Tin | |||
| 2 | LATITUDE | Latitude | Klanjscek, Tin | Geocode | ||
| 3 | LONGITUDE | Longitude | Klanjscek, Tin | Geocode | ||
| 4 | DATE/TIME | Date/Time | Klanjscek, Tin | Geocode | ||
| 5 | DEPTH, water | Depth water | m | Klanjscek, Tin | Geocode – Sampling at lowest depth for each fish farm = sea bottom | |
| 6 | Location | Location | Klanjscek, Tin | |||
| 7 | Season | Season | Klanjscek, Tin | |||
| 8 | Temperature, water | Temp | °C | Klanjscek, Tin | Multi-Parameter Water Quality Meter, YSI, ProDSS (ProDSS) | |
| 9 | Salinity | Sal | Klanjscek, Tin | Multi-Parameter Water Quality Meter, YSI, ProDSS (ProDSS) | PSU | |
| 10 | Total dissolved solids | TDS | mg/l | Klanjscek, Tin | Multi-Parameter Water Quality Meter, YSI, ProDSS (ProDSS) | |
| 11 | pH | pH | Klanjscek, Tin | Multi-Parameter Water Quality Meter, YSI, ProDSS (ProDSS) | ||
| 12 | Oxygen, dissolved | DO | % | Klanjscek, Tin | Multi-Parameter Water Quality Meter, YSI, ProDSS (ProDSS) | |
| 13 | Conductivity, specific | Cond | µS/cm | Klanjscek, Tin | Multi-Parameter Water Quality Meter, YSI, ProDSS (ProDSS) | |
| 14 | Depth of maximum transparency | Depth max trans | m | Klanjscek, Tin | Secchi disk (SD) | |
| 15 | Nitrogen, total | TN | mg/l | Klanjscek, Tin | Spectrophotometer, Hach Lange, DR600 | determined by oxidative digestion (ISO 11905-1:1997) with peroxodisulfate |
| 16 | Nitrate | [NO3]- | mg/l | Klanjscek, Tin | Spectrophotometer, Hach Lange, DR600 | determined by Cadmium reduction (Hach method: 8192) |
| 17 | Nitrite | [NO2]- | mg/l | Klanjscek, Tin | Spectrophotometer, Hach Lange, DR600 | determined by USEPA Diazotization (Hach method: 8507) |
| 18 | Ammonia | NH3 | mg/l | Klanjscek, Tin | Spectrophotometer, Hach Lange, DR600 | determined by Salicylate Method (Hach method: 10023) |
| 19 | Phosphorus, total | TP | mg/l | Klanjscek, Tin | Spectrophotometer, Hach Lange, DR600 | determined by Salicylate Method (Hach method: LCK348) |
| 20 | Total particulate matter | TPM | mg/l | Klanjscek, Tin | Determined in triplicates; 1-L aliquot samples were filtered onto pre-ashed (3 h at 450 °C) 47-mm GF/C filters (Whatman); after Paterson et al. (2003) | |
| 21 | Organic matter, particulate | POM | mg/l | Klanjscek, Tin | Determined in triplicates; 1-L aliquot samples were filtered onto pre-ashed (3 h at 450 °C) 47-mm GF/C filters (Whatman); after Paterson et al. (2003) | |
| 22 | Inorganic matter, particulate | PIM | mg/l | Klanjscek, Tin | Determined in triplicates; 1-L aliquot samples were filtered onto pre-ashed (3 h at 450 °C) 47-mm GF/C filters (Whatman); after Paterson et al. (2003) | |
| 23 | Bacteria, abundance in colony forming units | Bacteria CFU | CFU/ml | Klanjscek, Tin | Vibrio abundance; number of colonies showing relief from the plate surface from the Thiosulphate Citrate Bile Salt Sucrose (TCBS) (Difco, BD) agar plates |
License:
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Status:
Curation Level: Enhanced curation (CurationLevelC)
Size:
1756 data points